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Table 18 Number of genes on the promoter array that are regulated in response toCUX1 overexpression or CUX1 knockdown (1.25 fold)

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Effect of CUX1 on all genes and 4140 putative targets

CUX1 Overexpression or Knockdown

CUX1 Overexpression

CUX1 Knockdown

Gene list

All genes

Target genes

Target genes

Target genes

Up- or Downregulated

4880

27.7%

1437

34.7%

568

13.7%

1083

26.1%

Upregulated

2290

13.0%

696

16.8%

261

6.3%

546

13.2%

Downregulated

2590

14.7%

744

17.9%

307

7.4%

537

13.0%

  1. Number and percentage of all genes and CUX1 target genes on the promoterarray that exhibit a 1.25 fold change in expression following p110 CUX1overexpression or CUX1 knockdown. Genes were analyzed as inTable 15.