Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

BMC Genomics

Table 2 Distribution of CUX1, Myc and E2F1 binding sites in transcribed andnon-transcribed regions

	Encode platform	CUX1	c-MYC	E2F1
Number of binding sites		513	172	204
Non-transcribed regions	20.4%	28.1%	28.5%	5.9%
Transcribed regions	79.6%	70.9%	71.5%	94.1%
Enrichment in un-transcribed regions		1.61	1.56	0.24
P Value		0.0018	0.1333	<0.0001

Number of CUX1, C-Myc and E2F1binding sites in transcribed andun-transcribed regions. Also indicated are the fold enrichment intranscribed regions. P Values are calculated using a Fisher's exacttest.

ISSN: 1471-2164