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Table 3 A fraction of CUX1 binding sites locate close to enhancer elementsand DHS sites

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Type

CUX1

Random

Fold difference

P Value

DHS

19.2%

12.9%

1.49

0.0109

Enhancers

22.1%

15.2%

1.45

0.0100

Insulators

4.43%

4.40%

1.01

1.0000

  1. Percentages of CUX1 binding sites located more than 4 Kbps away froma TSS but within 1 Kbp of the indicated type of genomic element.Percentages are shown for a set of randomly generated binding sitesof the same size distribution as CUX1. P Value is calculated using aFisher's exact test. See Methods for information on the datasetsused.
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BMC Genomics

ISSN: 1471-2164

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