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Table 4 Binding sites and target genes predicted to be identified in promoterarrays

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Platform

Promoter array boundaries

% of Binding sites predicted in promoter array

CUX1

C-Myc

E2F1

Nimblegen

−3.5 kb to + 0.75 kb

17.2%

26.8%

80.4%

Agilent

−5.5 kb to + 2.5 kb

23.4%

34.3%

84.3%

Affymetrix

−7.5 kb to + 2.45 kb

26.6%

34.9%

85.8%

  1. Percentages of CUX1, C-Myc and E2F1 binding sites that wereidentified on the ENCODE array and that are located within theboundaries of promoters on various promoter array platforms.
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BMC Genomics

ISSN: 1471-2164

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