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Table 4 Binding sites and target genes predicted to be identified in promoterarrays

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Platform Promoter array boundaries % of Binding sites predicted in promoter array
CUX1 C-Myc E2F1
Nimblegen −3.5 kb to + 0.75 kb 17.2% 26.8% 80.4%
Agilent −5.5 kb to + 2.5 kb 23.4% 34.3% 84.3%
Affymetrix −7.5 kb to + 2.45 kb 26.6% 34.9% 85.8%
  1. Percentages of CUX1, C-Myc and E2F1 binding sites that wereidentified on the ENCODE array and that are located within theboundaries of promoters on various promoter array platforms.