Skip to main content

Table 2 A list of commonly up-regulated HLB responsive genes in various studies

From: Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to ‘CandidatusLiberibacter asiaticus’ infection

Probeset ID

AtGID

Arabidopsis gene annotation

GO term

Cit.10032.1.S1_x_at

AT1G75750

GA-responsive GAST1 homolog; BR, GA and ABA responsive expression; located in cell wall; GASA1 (GAST1 PROTEIN HOMOLOG 1)

Response to stimulus

Cit.12214.1.S1_s_at

AT5G46590

NAC096 (Arabidopsis NAC domain containing protein 96); transcription factor

Transcription

Cit.13437.1.S1_s_at

AT4G39210

APL3 (sugar-inducible); glucose-1- phosphate adenylyltransferase

Carbohydrate metabolic process

Cit.17561.1.S1_s_at

AT5G05365

Metal ion binding

Transport

Cit.19674.1.S1_s_at

AT3G45140

LOX2 (LIPOXYGENASE 2); lipoxygenase; response to JA, bacterium, fungus and wounding; JA biosynthetic process

Response to stimulus

Cit.25840.1.S1_s_at

AT1G17840

WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter; response to stress and ABA

Transport; Response to stimulus

Cit.30071.1.S1_at

AT5G02580

Unknown protein (auxin-ethylene interaction, gemivirus induced)

Unknown process

Cit.33707.1.S1_at

AT4G27900

CCT motif family protein (ethylene, gemivirus-induced)

Unknown process

Cit.7635.1.S1_at

AT3G15650

Phospholipase/carboxylesterase family protein

Other metabolic process

Cit.5367.1.S1_at

 

Transcript Assignment: DN622378; Human protein tyrosine phosphatase type IVA

Unknown process

Cit.3534.1.S1_s_at

 

Grape RAP2-4-like ethylene transcription factor

Unknown process

Cit.29171.1.S1_at

 

UCRPT02_65A04_b Poncirus trifoliata Roots with Iron Deficiency cDNA clone

Unknown process

Cit.19313.1.S1_at

 

Transcript Assignment: CX308038; Hypothetical protein

Unknown process

Cit.11459.1.S1_s_at

AT1G05300

ZIP5; cation/metal ion transmembrane transporter

Transport

Cit.11460.1.S1_at

AT1G05300

ZIP5; cation/metal ion transmembrane transporter

Transport

Cit.12172.1.S1_at

AT4G35160

O-methyltransferase family 2 protein

Other metabolic process

Cit.15630.1.S1_at

AT4G33040

Glutaredoxin family protein

Oxidation-reduction process

Cit.17155.1.S1_at

AT1G02850

BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds

Carbohydrate metabolic process

Cit.17155.1.S1_s_at

AT1G02850

BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds

Carbohydrate metabolic process

Cit.3171.1.S1_x_at

AT1G18880

Proton-dependent oligopeptide transport (POT) family protein

Transport

Cit.23598.1.S1_s_at

  

Unknown process

  1. The first section contains 13 ProbeSets up-regulated in all six studies. The second section includes eight Probesets up-regulated in five studies (except Study 6, see Table 1) but their expression was higher in US-897 than in Cleopatra. AtGID, Arabidopsis gene ID.