Figure 2

A 913-bp repeat contig assembled with 454 reads. A. The 5 prime end of the contig, independently assembled by the reads from Contig64 and Contig63. B. The3 prime end of the contig, assembled as described in panel A, but reads extended into Contig52 and Contig76. C. The list of read names from the “ace” file. D. The list of reads whose names contained ‘fm’ or ‘to’, which linked to the unique and repeat contigs, respectively.