From: ContigScape: a Cytoscape plugin facilitating microbial genome gap closing
ID | Type | S`trains | Size (Mbp) | Repeat contigs | All contigs | Large contigs | Coverage | Average length | Ribosomal RNAs | Plasmid | Accession number |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | bacteria | Amycolatopsis mediterranei S699 [21] | 10.25 | 16 | 75 | 67 | 31 | 532 | 4 | none | CP003729 |
2 | bacteria | Ralstonia solanacearum Po82 [22] | 3.48, 1.95 | 26 | 149 | 115 | 27 | 328 | 3 | none | CP002819-CP002820 |
3 | bacteria | Amycolatopsis orientalis HCCB10007 | 8.95 | 14 | 69 | 53 | 25 | 408 | 4 | 1 | CP003410 |
4 | bacteria | Mycobacterium tuberculosis CCDC5079 | 4.41 | 27 | 179 | 147 | 29 | 434 | 1 | none | CP002884 |
5 | bacteria | Leptospirillum ferriphilum ML-04 [23] | 2.41 | >50 | 267 | 213 | 31 | 311 | 2 | none | CP002919 |
6 | bacteria | Bacillus thuringiensis BMB171 [24] | 5.64 | 10 | 221 | 168 | 32 | 391 | 14 | 1 | CP001903-CP001904 |
7 | bacteria | Edwardsiella tarda EIB202 [25] | 3.76 | 15 | 223 | 64 | 17 | 256 | 7 | 1 | CP001135 |
8 | archaea | Acidianus hospitalis W1 [26] | 2.16 | 1 | 11 | 7 | 31 | 409 | 1 | 1 integrated | CP002535 |
9 | virus | Cotesia vestalis | 0.52 | >35 | 572 | 265 | 135 | 381 | none | none | HQ009524-HQ009558 |
Bracovirus[27] | |||||||||||
10 | mycoplasma | Mycoplasma bovis | 0.95 | 25 | 111 | 75 | 49 | 360 | 2 | none | CP002513 |
Hubei-1 [28] | |||||||||||
11 | fungi | Cordyceps militaris[29] | 32.2 | >100 | 2426 | 1670 | 147 | 385 | NA | none | AEVU00000000 |