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Table 2 Summary of the contigs present in each kokanee data set

From: Transcriptome-wide comparison of sequence variation in divergent ecotypes of kokanee salmon

 

Total contigs

High coverage data set1

Shore-unique contigs2

Stream-unique contigs2

No. of contigs

123,547

11,074

277

557

Mean coverage

7.5

37.0

6.8

8.4

Mean length

463.7

594.8

374.2

404.2

Mean no. of reads

14.2

77.9

8.5

12.7

  1. 1 In the high coverage data set each contig has a minimum length of 200 bases and a minimum of 5× coverage for each ecotype. In addition, this data set has duplicate contigs and contigs that map to pathogen DNA sequences removed.
  2. 2 Contigs composed of reads from a single ecotype. Minimum length = 200 bases; minimum coverage = 5×. Contigs that map to pathogen DNA sequences have been removed.
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BMC Genomics

ISSN: 1471-2164

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