Table 2 Statistically significant upregulated genes involved in carbohydrate uptake and catabolism
From: Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactisBl-04
ORF | Gene annotation | Inducing CHO type | Volcano plot (Figure3) | Highest inducing CHO | Gene cluster (Figure5) | Fold upregulated | -log10(P-value) |
|---|---|---|---|---|---|---|---|
Balac_0053 | β-galactosidase, GH42 | Glucoside | C | gentiobiose | A | 6.5 | 13.8 |
Balac_0054 | MFS permease | Glucoside | C | gentiobiose | A | 4.8 | 11.8 |
Balac_0475 | MFS permease | Galactoside | A | GOS | B | 21.8 | 19.9 |
Balac_0476 | β-galactosidase, GH2 | Galactoside | A | GOS | B | 36.9 | 17.9 |
Balac_0484 | β-galactosidase, GH42 | Galactoside | A | GOS | C | 11.4 | 17.2 |
Balac_0485 | ABC transporter, permease component | Galactoside | A | GOS | C | 8.4 | 16.2 |
Balac_0486 | ABC transporter, permease component | Galactoside | A | GOS | C | 5.7 | 12.9 |
Balac_0511 | Xylose isomerase | xyloside | A,C | XOS | D | 13.8 | 15.1 |
Balac_0512 | α-l-arabinofuranosidase, GH43 | xyloside | A,C | XOS | D | 6.8 | 13.6 |
Balac_0513 | Transcriptional regulator LacI | xyloside | A,C | Xylobiose | D | 3.0 | 10.1 |
Balac_0514 | ABC transporter, oligosaccharide-binding protein | xyloside | A,C | XOS | D | 9.0 | 16.0 |
Balac_0515 | ABC transporter, permease component | xyloside | A,C | XOS | D | 16.8 | 16.5 |
Balac_0516 | ABC transporter, permease component | xyloside | A,C | XOS | D | 18.3 | 17.5 |
Balac_0517 | β-xylosidase, GH43 | xyloside | A,C | XOS | D | 17.9 | 16.1 |
Balac_0518 | Putative carbohydrate esterase | xyloside | A,C | XOS | D | 14.2 | 11.3 |
Balac_0519 | Esterase | xyloside | A,C | XOS | D | 6.9 | 15.1 |
Balac_0520 | α-l-arabinofuranosidase, GH43 | xyloside | A,C | XOS | D | 10.2 | 15.2 |
Balac_0521 | Xylulose kinase | xyloside | A,C | Xylobiose | D | 18.2 | 19.0 |
Balac_1567 | 4-α-glucanotransferase | glucoside | B,D | Maltriose | E | 9.7 | 14.5 |
Balac_1569 | ABC transporter, permease component | glucoside | B,D | Cellobiose | E | 5.2 | 13.7 |
Balac_1570 | ABC transporter, permease component | glucoside | B,D | Cellobiose | E | 3.7 | 15.1 |
Balac_1571 | Transcriptional regulator LacI | glucoside | B,D | Cellobiose | E | 3.7 | 13.1 |
Balac_1572 | ABC transporter, oligosaccharide-binding protein | glucoside | B,D | Cellobiose | E | 3.2 | 12.1 |
Balac_1593 | oligo-1,6-α-glucosidase, GH13 | Galactoside, Glucoside | B,D,E | Isomaltose | F | 4.5 | 14.0 |
Balac_1597 | ABC transporter, permease component | Galactoside, Glucoside | B,D,E | Raffinose | F | 14.1 | 13.9 |
Balac_1598 | ABC transporter, permease component | Galactoside, Glucoside | B,D,E | Isomaltose | F | 20.1 | 18.6 |
Balac_1599 | ABC transporter, oligosaccharide-binding protein | Galactoside, Glucoside | B,D,E | Isomaltose | F | 17.8 | 16.7 |
Balac_1601 | α-galactosidase, GH36 | Galactoside, Glucoside | B,D,E | Raffinose | F | 8.1 | 16.4 |