Exploring the larval transcriptome of the common sole (Solea soleaL.)

Ferraresso, Serena; Bonaldo, Alessio; Parma, Luca; Cinotti, Stefano; Massi, Paola; Bargelloni, Luca; Gatta, Pier Paolo

doi:10.1186/1471-2164-14-315

BMC Genomics

Table 1 Genes up- or down-regulated over time

From: Exploring the larval transcriptome of the common sole (Solea soleaL.)

MUSCLE DEVELOPMENT
Probe Name	Ensembl Acc. Number	Gene name
N_isotig14746	ENSDARG00000032976	Cardiac myosin light chain-1
P_isotig00564	ENSDARG00000023963	Tropomyosin
N_isotig13004	ENSDARG00000020610	Troponin T
N_isotig07042	ENSDARG00000024141	Caveolin 3
N_isotig07602	ENSDARG00000009021	Cholinergic receptor, nicotinic, alpha 1 (CHNRA)
N_isotig21306	ENSDARG00000071433	Slow myosin heavy chain 2
N_isotig01223	ENSDARG00000045242	Slow myosin heavy chain 3
N_isotig04075	ENSDARG00000028213	Titin a
N_isotig11618	ENSDARG00000000563	Titin b
N_isotig08672	ENSDARG00000019342	Cholinergic receptor, nicotinic, delta polypeptide
N_isotig19778	ENSDARG00000031756	Myocyte enhancer factor 2a
N_isotig05817	ENSDARG00000054942	Lectin, galactoside-binding, soluble, 1 (galectin 1)-like 1
P_isotig17511	ENSDARG00000026473	Sine oculis homeobox homolog 1b
N_isotig01855	ENSDARG00000006112	Ras-related C3 botulinum toxin substrate 1
N_isotig03727	ENSDARG00000034240	Capping protein muscle Z-line, alpha 1
P_isotig01165	ENSDARG00000046004	Capping protein muscle Z-line, beta
P_isotig18441	ENSDARG00000023797	Ryanodine receptor 1b
N_isotig17357	ENSDARG00000019096	Myosin, light polypeptide 7
GLUCOSE METABOLISM
Probe Name	Ensembl Acc. Number	Gene name
N_contig01740	ENSDARG00000003191	Pyruvate kinase, muscle, b
N_isotig13675	ENSDARG00000004059	Galactokinase
N_isotig03674	ENSDARG00000005161	Glucose phosphate isomerase b
P_isotig13251	ENSDARG00000005423	Phosphoglycerate mutase 1a
P_contig00403	ENSDARG00000011665	Aldolase a, fructose-bisphosphate, a
N_isotig03547	ENSDARG00000014179	Phosphofructokinase, muscle a
P_isotig10593	ENSDARG00000016875	Glycogen synthase 1
P_isotig18039	ENSDARG00000019702	Aldolase c, fructose-bisphosphate
N_isotig03683	ENSDARG00000022456	Enolase 1, (alpha)
N_isotig04393	ENSDARG00000026964	Hexokinase 2
N_isotig06502	ENSDARG00000028088	Galactokinase 1
N_isotig03558	ENSDARG00000030604	Phosphorylase kinase, gamma 1 (PHKG1a)
N_isotig18841	ENSDARG00000039914	Glyceraldehyde-3-phosphate dehydrogenase
P_isotig00860	ENSDARG00000040856	Lactate dehydrogenase A4
P_isotig00400	ENSDARG00000043180	Glycerol-3-phosphate dehydrogenase 1b
N_contig00167	ENSDARG00000054191	Phosphoglycerate kinase 1
N_isotig05258	ENSDARG00000057571	Phosphoglycerate mutase 2 (muscle)
N_isotig12521	ENSDARG00000057630	Aldose 1-epimerase
N_isotig06792	ENSDARG00000060797	Phosphofructokinase, muscle b
P_isotig13923	ENSDARG00000062998	Peptidoglycan recognition protein 2
P_isotig03551	ENSDARG00000070826	2,3-bisphosphoglycerate mutase
N_isotig20169	ENSDARG00000071076	Similar to L-lactate dehydrogenase B chain
HEDGEHOG SIGNALLING PATHWAY
Probe Name	Ensembl Acc. Number	Gene name
N_isotig03639	ENSDARG00000052131	GLI-Kruppel family member GLI3
N_isotig05619	ENSDARG00000008370	Casein kinase 1, delta a
N_isotig07032	ENSDARG00000005458	Casein kinase 1, gamma 2a
N_isotig10399	ENSDARG00000017803	Glycogen synthase kinase 3 beta (GSK3B)
N_isotig10687	ENSDARG00000034056	Casein kinase 1, gamma 2b
N_isotig12392	ENSDARG00000004965	Bone morphogenetic protein 5
N_isotig15047	ENSDARG00000071107	Wingless-type MMTV integration site family,7Bb (WNT7)
N_isotig19239	ENSDARG00000060397	Hedgehog interacting protein (HiP)
N_isotig20428	ENSDARG00000017230	F-box and WD-40 domain protein 11b (FBXW11)
N_isotig21462	ENSDARG00000014134	Similar to cAMP-dependent protein kinase (PKA C-alpha)
P_isotig04440	ENSDARG00000059125	Protein kinase, cAMP-dependent, catalytic, beta
P_isotig07996	ENSDARG00000060649	Megalin, low density lipoprotein-related protein 2 (LRP2)
P_isotig12515	ENSDARG00000052674	Casein kinase 1, alpha 1
P_isotig16544	ENSDARG00000015554	Zic family member 2
P_isotig17732	ENSDARG00000063230	Bone morphogenetic protein 7b
P_isotig18139	ENSDARG00000068567	Sonic hedgehog-like; Sonic hedgehog a
WNT SIGNALLING PATHWAY
Probe Name	Ensembl Acc. Number	Gene name
P_isotig22061	ENSDARG00000004305	Vang-like 1 (van gogh, Drosophila)
P_isotig10261	ENSDARG00000007791	Protein phosphatase 2 (formerly 2A), regulatory subunit, beta
P_isotig04271	ENSDARG00000009689	Dishevelled associated activator of morphogenesis 1
P_isotig18727	ENSDARG00000009870	Mitogen-activated protein kinase 8
N_isotig02405	ENSDARG00000013582	Similar to Casein kinase II subunit alpha (CK II)
N_isotig21462	ENSDARG00000014134	Similar to cAMP-dependent protein kinase (PKA C-alpha)
N_isotig04292	ENSDARG00000014571	Catenin, beta 2
N_isotig02225	ENSDARG00000014731	Calcyclin binding protein
N_isotig20428	ENSDARG00000017230	F-box and WD-40 domain protein 11b
N_isotig10399	ENSDARG00000017803	Glycogen synthase kinase 3 beta
P_isotig06163	ENSDARG00000019239	Cullin 1a
N_isotig12285	ENSDARG00000025747	Mitogen-activated protein kinase 10
P_isotig09852	ENSDARG00000027397	Vang-like 2 (van gogh, Drosophila)
AS_isotig13833	ENSDARG00000031894	Lymphocyte enhancer binding factor 1
P_isotig13436	ENSDARG00000038954	Beta-catenin-interacting protein
N_isotig20334	ENSDARG00000039041	Secreted frizzled-related protein 5
P_isotig04697	ENSDARG00000044062	C-terminal binding protein 2
N_isotig16673	ENSDARG00000045444	Frizzled homolog 8a
P_isotig12515	ENSDARG00000052674	Casein kinase 1, alpha 1
N_isotig03709	ENSDARG00000053020	Protein phosphatase 2 (formerly 2A), catalytic subunit A
P_isotig14067	ENSDARG00000057007	C-terminal binding protein 1
P_isotig10768	ENSDARG00000060716	Similar to Serine/threonine-protein kinase PRKX
N_isotig11316	ENSDARG00000060976	CREB binding protein b
N_isotig04935	ENSDARG00000061308	CREB binding protein a
N_isotig15047	ENSDARG00000071107	Wingless-type MMTV integration site family, 7Bb
P_isotig08176	ENSDARG00000075226	Smad4
P_isotig03701	ENSDARG00000077776	Casein kinase 2 beta

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ISSN: 1471-2164

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