Figure 7

Venn diagram for differentially expressed genes involved in RKN resistance in PI 595099. The numbers in the graph represent the number of genes differentially expressed as measured by differential expression analysis (p-value < = 0.1). Gene sets were grouped according to GO annotation obtained from the agriGO database for the gene ontology analysis and Phytozome (see Methods and Table S3). AUX, GA-BR, ET-JA include genes annotated in biological processes that in which plant hormones auxins, gibberellins or brassinosteroids and ethylene or jasmonates participate, respectively. ROS include genes annotated in the oxidation-reduction and response to oxidative stress GO terms. “Phenolic compounds (PC)” include genes annotated in biological processes related to biosynthesis pathways leading to the formation of main groups of phenolic compounds (phenylopropanoids and flavonoids). The search was performed on the GO associations listed in Table S3 using the key words “auxin*”, “gibberell*” OR brassinosteroid*”, “ethylene OR jasmon*”, “oxidation-reduction OR oxidative” and “flavon* OR phenylprop*”.