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Table 2 Results for S. cerevisiae

From: Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

A) S. cerevisiae Biological Process
  Degree Betweenness Transitivity Hubscore Closeness
GRN/PPN 32/1265 0/1265 2/1265 0/1265 0/1265
TRN/PPN 0/1057 0/1057 0/1057 0/1057 0/1057
GRN/TRN 1/1044 0/1044 1/1044 0/1044 0/1044
B) S. cerevisiae Cellular Component
GRN/PPN 4/295 0/295 7/295 5/295 0/295
TRN/PPN 0/245 0/245 0/245 0/245 0/245
GRN/TRN 0/241 0/241 0/241 0/241 0/241
C) S. cerevisiae Molecular Function
GRN/PPN 0/375 0/375 5/375 3/375 0/375
TRN/PPN 2/308 0/308 0/308 0/308 0/308
GRN/TRN 0/304 0/304 0/304 0/304 0/304
D) S. cerevisiae transitivity centrality GRN/PPN (Cellular Component)
GO Term Size ρ p f d r  
GO:0031597 Cytosolic proteasome complex 202 0.30 0.002024  
GO:0005875 Microtubule associated complex 560 0.16 0.009816  
GO:0019005 SCF ubiquitin ligase complex 26 0.65 0.01706  
GO:0031903 Microbody membrane 17 0.74 0.02134  
GO:0000785 Chromatin 522 0.15 0.02134  
GO:0000313 Organellar ribosome 17 0.74 0.02134  
GO:0005654 Nucleoplasm 12 0.81 0.03283  
  1. Spearman’s rank correlation coefficient test for centrality measures between the GRN, TRN and PPN of Gene Ontology subnetworks for A Biological Process, B Cellular Component and C Molecular Function. A-C Tests are performed for degree, betweenness, transitivity (local clustering coefficient), hubscore and closeness centrality. Each column, shows the number of significant terms and the total number of terms tested. D shows 7 terms for cellular components with significant transitivity centrality between theS. cerevisiae GRNand PPN.