Table 3 Total, and distinct genome-matched sRNAs among all libraries for different classes of genomic elements

Protein-coding genes

2,084,221

368,507

Antisense to protein-coding genes

635,227

71,846

Intergenic regions

38,026,665

231,988

Repeats

28,238,241

73,293

• DNA/TcMar-Pogo

7,353

291

• LINE/Tad1

68,533

2,983

• Low complexity

16

9

• LTR/Gypsy

3,126,380

37,857

• rRNA

25,039,488

31,775

• Simple repeat

1,888

407

Mitochondrial sequences

418,691

9,310

Noncoding RNAs (tRNAs or rRNAs)

15,297

4,281

Antisense to noncoding RNAs

2,379

762