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Table 5 Features of sRNAs associated with fungal genes down-regulated during infection

From: Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

Gene ID/Description sRNAa Microarrayb Signature Chromosome Origin LMg72c LMg96 c
MGG_02390.7 conserved hypothetical protein 14.91 -1.31 GCAGGCAGAGGAACACTGAAGCA 1 3’UTR sense 287 0
    CTGCAGGGCTGTCTTCTGATGGA   Exon sense 0 162
    CTGCAGGGCTGTCTTCTGATGG   Exon sense 0 137
    CGGCGACTTAGCTGCCTCTGAACCCGGCTACCAT   5’UTR sense 0 150
MGG_06609.7 acetyl-CoA hydrolase 17.18 -1.37 CAAGGAGAGGATTCTGTTGCGATCGCAGT 4 Exon sense 790 0
MGG_09965.7 conserved hypothetical protein 0.00 -1.80 GAACAGGGCTGGCTTGCCTGACAAC 4 5’UTR sense 503 0
MGG_08843.7 magnesium transporter ALR2 36.75 -3.30 GATGACTTGGAAGTATGAAGCCAGCGTGATGG 2 5’UTR antisense 395 0
    AACACGTCGGGAACTCGGGCTA   5’UTR sense 215 0
MGG_04696.7    CGGTTGGACAGAGTATTCGGCA 2 3’UTR sense 0 175
    TCGGTTGGACAGAGTATTCGGCAGTTCGA   3’UTR sense 0 12
    TCGGTTGGACAGAGTATTCGGCAG   3’UTR sense 36 0
    ATCGGTTGGACAGAGTATTCGGCAGT   3’UTR sense 0 100
    TGAAGAAGGTTCTCTGCATGGGT   Exon sense 108 0
    TCCAGCTGAAGAAGGTTCTCTGCATGG   Exon sense 0 100
    GGCTGACGACTTGAAGAAGCTGAA   Exon sense 251 225
    CGGCTGACGACTTGAAGAAGCTGAA   Exon sense 323 262
    CATGTCGGCTGACGACTTGAAGAAGCTGA   Exon sense 0 137
    CGAGACCGTCGAGCTCCAGATCGGCCT   Exon sense 0 125
    CTCGAGACCGTCGAGCTCCAGATCGG   Exon sense 0 137
MGG_01991.7 betaine aldehyde dehydrogenase 12.55 -1.75 CAGTGGTCTCGGCACTGAGAACGGT 1 Exon sense 180 0
    TCAAGTGGTTTCGGTACTACGCAGCT   Exon sense 36 0
MGG_06868.7 acetolactate synthase catalytic subunit 10.42 -2.02 GTGGAAGGAGAAGTGGCCTCTGTCACA 1 Exon sense 287 0
    CAACATGACTCTGACAGAGCTTTCGACGGCG   Exon sense 467 0
    ACATGACTCTGACAGAGCTTTCGAC   Exon sense 0 162
    AGCCTGACGATGTCGTTGATGCTC   Exon sense 359 0
    AGCCTGACGATGTCGTTGATGCT   Exon sense 610 0
    TTGTCGGAAGGCGGCGTTGAACTTC   Exon sense 0 87
MGG_04428.7 zinc finger transcription factor ace1 28.29 -2.11 CATGGCTCGCCGCAAGAAGAACG 2 Exon sense 180 0
    AAGGCCATCTCACTGGCCACTG   Exon sense 0 37
MGG_01596.7 DNA damage response protein kinase DUN1 18.67 -3.00 CAGGCAAGGGCAAGGAACACT 2 Exon sense 251 0
    AAGGAACACTGAACCGTGGAAC   Exon sense 215 0
MGG_04994.7    CGACTCTGACGACGAGGATGGAAC 3 Exon sense 0 237
    CAGATCTCCCTGACTGAGAACTGGCT   Exon sense 287 0
    CGGTTTCGGTTGGTTCTCTGGCGGCC   Exon sense 0 75
    TTCGGTTGGTTCTCTGGCGGCCTCGGC   Exon sense 36 0
    GTTGGTTCTCTGGCGGCCTCGGCGAG   Exon sense 0 150
MGG_09395.7    has Tandem repeats on it 6    
MGG_06714.7    CAAGGACAAGTGGGTGTTGAACGACAGC 1 Exon sense 539 0
  1. a Ratio of sRNA between rice library and CM library based on cluster data.
  2. b Expression of genes at 72hpi in rice compared to CM using microarray data [29].
  3. c Abundance of signature.