Table 3 Program result summary for ChIP-seq datasets
From: NEXT-peak: a normal-exponential two-peak model for peak-calling in ChIP-seq data
| Â | STAT1 | NRSF | ZNF143 | ||||||
|---|---|---|---|---|---|---|---|---|---|
Program | #motif sites | mean distance | mean bias | #motif sites | mean distance | mean bias | #motif sites | mean distance | mean bias |
HPeak | 726 | 23.6 | 12.0 | 1489 | 7.5 | 0.2 | 698 | 26.0 | 0.5 |
WTD | 732 | 20.2 | 0.7 | 1487 | 17.4 | −16.5 | 698 | 26.1 | −13.4 |
MTC | 737 | 18.8 | 1.3 | 1498 | 16.7 | −15.8 | 697 | 25.7 | −12.2 |
CisGenome | 716 | 28.5 | 11.3 | 1471 | 8.0 | 0.3 | 681 | 27.6 | −15.1 |
MACS | 740 | 24.4 | −0.9 | 1491 | 18.5 | −17.4 | 709 | 27.2 | −13.8 |
QuEST | 715 | 24.9 | 11.2 | 1105 | 8.3 | −0.4 | 703 | 22.0 | 1.2 |
SISSRs | 659 | 19.6 | −0.2 | 1413 | 18.1 | −16.8 | 661 | 29.1 | −14.3 |
NEXT-peak | 781 | 16.7 | −1.6 | 1507 | 6.0 | −0.5 | 707 | 20.3 | 0.6 |