Skip to main content

Table 5 Ferulic acid-responsive transcripts related to transporter

From: Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid

 

Short exposures

Long exposures

Family name

In genome

On array

Detected

Increase a

Decrease

Increase

Decrease

ATP-dependent

       

ATP-binding Cassette (ABC) Superfamily

130

115

80

17*

1

3

0

P-type ATPase (P-ATPase) Superfamily

45

42

37

3

0

0

0

Ion channels

       

Ammonia Transporter Channel (Amt) Family

12

8

7

0

2

0

0

Annexin (Annexin) Family

9

6

6

1

0

1

0

Glutamate-gated Ion Channel (GIC) Family of Neurotransmitter

21

12

10

1

0

1

0

Major Intrinsic Protein (MIP) Family

37

33

24

0

0

0

1

Secondary transporter

       

Amino Acid/Auxin Permease (AAAP) Family

63

52

41

5

0

0

0

Auxin Efflux Carrier (AEC) Family

19

16

11

2

1

0

0

Amino Acid-Polyamine-Organocation (APC) Family

27

22

20

1

0

0

0

Aromatic Acid Exporter (ArAE) Family

14

13

6

1

0

1

0

Arsenite-Antimonite (ArsB) Efflux Family

3

3

3

1

0

0

0

Ca2+:Cation Antiporter (CaCA) Family

16

15

13

1

0

0

0

Chloride Carrier/Channel (ClC) Family

9

9

8

0

1

0

0

Divalent Anion:Na + Symporter (DASS) Family

7

7

5

1

0

0

0

Drug/Metabolite Transporter (DMT) Superfamily

123

106

86

4

1

0

1

K + Transporter (Trk) Family

7

7

2

1

0

0

0

Mitochondrial Carrier (MC) Family

61

59

55

2

0

0

0

Major Facilitator Superfamily (MFS)

151

133

103

9

2

1

1

Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily

57

44

34

5

1

0

0

Monovalent Cation:Proton Antiporter-2 (CPA2) Family

20

18

4

1

0

1

0

Proton-dependent Oligopeptide Transporter (POT) Family

86

74

50

5

0

0

0

Telurite-resistance/Dicarboxylate Transporter (TDT) Family

9

8

4

0

1

1

0

Sulfate Permease (SulP) Family

14

14

13

1

0

0

0

Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family

18

16

12

2

0

0

0

  1. a Functional categories of genes, total number of genes found within the rice genome, numbers of genes present on and detected on arrays, and numbers of genes showing significant differences (FDR <0.1) in transcript abundance are shown in rows and columns labeled accordingly. Transporter families that are overrepresented in the response group are shown with asterisks (P < 0.05).