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Table 5 Ferulic acid-responsive transcripts related to transporter

From: Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid

  Short exposures Long exposures
Family name In genome On array Detected Increase a Decrease Increase Decrease
ATP-dependent        
ATP-binding Cassette (ABC) Superfamily 130 115 80 17* 1 3 0
P-type ATPase (P-ATPase) Superfamily 45 42 37 3 0 0 0
Ion channels        
Ammonia Transporter Channel (Amt) Family 12 8 7 0 2 0 0
Annexin (Annexin) Family 9 6 6 1 0 1 0
Glutamate-gated Ion Channel (GIC) Family of Neurotransmitter 21 12 10 1 0 1 0
Major Intrinsic Protein (MIP) Family 37 33 24 0 0 0 1
Secondary transporter        
Amino Acid/Auxin Permease (AAAP) Family 63 52 41 5 0 0 0
Auxin Efflux Carrier (AEC) Family 19 16 11 2 1 0 0
Amino Acid-Polyamine-Organocation (APC) Family 27 22 20 1 0 0 0
Aromatic Acid Exporter (ArAE) Family 14 13 6 1 0 1 0
Arsenite-Antimonite (ArsB) Efflux Family 3 3 3 1 0 0 0
Ca2+:Cation Antiporter (CaCA) Family 16 15 13 1 0 0 0
Chloride Carrier/Channel (ClC) Family 9 9 8 0 1 0 0
Divalent Anion:Na + Symporter (DASS) Family 7 7 5 1 0 0 0
Drug/Metabolite Transporter (DMT) Superfamily 123 106 86 4 1 0 1
K + Transporter (Trk) Family 7 7 2 1 0 0 0
Mitochondrial Carrier (MC) Family 61 59 55 2 0 0 0
Major Facilitator Superfamily (MFS) 151 133 103 9 2 1 1
Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily 57 44 34 5 1 0 0
Monovalent Cation:Proton Antiporter-2 (CPA2) Family 20 18 4 1 0 1 0
Proton-dependent Oligopeptide Transporter (POT) Family 86 74 50 5 0 0 0
Telurite-resistance/Dicarboxylate Transporter (TDT) Family 9 8 4 0 1 1 0
Sulfate Permease (SulP) Family 14 14 13 1 0 0 0
Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family 18 16 12 2 0 0 0
  1. a Functional categories of genes, total number of genes found within the rice genome, numbers of genes present on and detected on arrays, and numbers of genes showing significant differences (FDR <0.1) in transcript abundance are shown in rows and columns labeled accordingly. Transporter families that are overrepresented in the response group are shown with asterisks (P < 0.05).