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Table 4 Gene clusters up-regulated in sawdust

From: The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera

Gene IDs

Putative function

Secreted

Log2(FC)*

Cluster 1

   

OPP_08738

Inositol monophosphatase

No

3.98

OPP_08737

Catabolic 3-dehydroquinase

No

5.78

OPP_08736

3-dehydroshikimate dehydratase

No

7.20

OPP_08735

Quinate dehydrogenase

No

5.65

Cluster 2

   

OPP_06948

Allantoate permease

No

8.05

OPP_06946

Sarcosine oxidase

No

5.97

OPP_06944

Fungal-specific transcription factor domain protein

No

4.50

OPP_06943

Oxoglutarate 3-dioxygenase

No

8.75

Cluster 3

   

OPP_07708

Sugar transporter

No

6.06

OPP_07707

Salicylate hydroxylase (salicylate 1-monooxygenase)

Yes

7.75

OPP_07706

NAD dependent epimerase

Yes

3.62

OPP_07705

Arylacetamide deacetylase

No

4.69

Cluster 4

   

OPP_08830

Amidohydrolase family protein

No

8.98

OPP_08829

Aldehyde dehydrogenase

No

7.04

OPP_08827

FAD binding domain protein

Yes

6.25

OPP_08826

Retinol dehydrogenase 13

No

7.78

OPP_08825

Cytochrome p450

No

9.25

OPP_08824

General alpha-glucoside permease

No

7.98

Cluster 5

   

OPP_07998

Xaa-pro dipeptidase

No

3.34

OPP_07997

Major facilitator superfamily transporter

No

4.21

OPP_07996

Hexose transporter

No

5.56

OPP_07995

Thymine dioxygenase

No

4.95

Cluster 6

   

OPP_01495

N-carbamoyl-l-amino acid hydrolase

No

9.85

OPP_01494

Gal4-like transcription factor

No

6.74

OPP_01493

Class ii aldolase adducin domain-containing protein

No

9.97

OPP_01491

Isoflavone reductase family protein

Yes

6.49

Cluster 7

   

OPP_05544

Hypothetical protein

No

10.82

OPP_05543

Alpha-mannosyltransferase

Yes

8.083

OPP_05542

Ethanolamine utilization protein

No

7.16

OPP_05541

C6 zinc finger domain containing protein

No

4.99

OPP_05540

Alpha-mannosyltransferase

No

8.78

Cluster 8

   

OPP_02428

Myo-inositol transporter

No

7.42

OPP_02427

Arca-like protein

No

3.81

OPP_02426

Benzoate 4-monooxygenase cytochrome p450

No

4.45

OPP_02425

NADPH-cytochrome p450 reductase

No

5.12

OPP_02424

NAD binding rossmann fold

No

4.02

  1. * FC = fold change.