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Table 1 Assembly statistics for k-mer lengths 19–49 and different k-mer merge ranges from the Oases de novo assembly program

From: RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

 

k19

k21

k23

k25

k27

k29

k31

k33

k35

k37

k39

k41

k43

k45

k47

k49

k19_39

k21_39

k25_47

k21_49

Total sequences

1.2E+05

7.3E+04

6.2E+04

5.5E+04

5.2E+04

5.0E+04

4.8E+04

7.0E+04

8.2E+04

8.1E+04

8.2E+04

4.3E+04

4.1E+04

4.0E+04

3.9E+04

5.6E+04

4.5E+05

1.1E+05

4.0E+05

4.9E+05

Total bases

6.7E+07

6.1E+07

5.6E+07

5.3E+07

5.1E+07

5.0E+07

4.9E+07

6.2E+07

7.2E+07

7.3E+07

7.2E+07

4.4E+07

4.3E+07

4.2E+07

4.1E+07

5.1E+07

4.8E+08

1.3E+08

4.4E+08

5.5E+08

Min sequence length

7.1E+01

1.0E+02

8.1E+01

1.0E+02

9.8E+01

1.0E+02

9.0E+01

1.0E+02

1.0E+02

1.0E+02

1.0E+02

9.9E+01

1.0E+02

1.0E+02

1.0E+02

1.0E+02

1.0E+02

1.0E+02

1.0E+02

1.0E+02

Max sequence length

1.5E+04

1.7E+04

2.0E+04

1.8E+04

2.1E+04

2.3E+04

1.8E+04

1.2E+04

1.3E+04

1.3E+04

1.4E+04

1.7E+04

1.7E+04

1.7E+04

1.7E+04

1.4E+04

2.3E+04

1.7E+04

2.3E+04

2.3E+04

Average sequence length

558.04

837.19

906.27

960.63

979.44

991.21

1010.47

884.15

888.33

901.83

884.62

1026.19

1037.21

1042.06

1049.7

903.57

1071.74

1245.3

1114.01

1124.62

Median sequence length

356

527

546

580

584

590

605

595

583

584

568

624

634

639

650

608

780

930

805

818

N50 length

873

1397

1585

1686

1746

1759

1801

1398

1460

1493

1492

1785

1789

1795

1786

1457

1589

1856

1671

1689

(A + T)s

55.25%

55.32%

55.25%

55.16%

55.16%

55.17%

55.12%

55.07%

55.21%

55.35%

55.38%

55.04%

55.03%

55.05%

55.03%

54.85%

55.95%

55.11%

55.69%

56.13%

(G + C)s

43.99%

44.27%

44.47%

44.60%

44.64%

44.67%

44.72%

44.83%

44.63%

44.49%

44.48%

44.86%

44.87%

44.87%

44.89%

45.08%

44.05%

44.89%

44.31%

43.87%

Ns

0.77%

0.41%

0.28%

0.23%

0.21%

0.16%

0.16%

0.10%

0.16%

0.16%

0.14%

0.10%

0.10%

0.08%

0.08%

0.06%

0.00%

0.00%

0.00%

0.00%