Skip to main content

Table 2 Putative selective sweep regions identified by analysis of BovineSNP50 genotypes

From: Detection of selective sweeps in cattle using genome-wide SNP data

Breed BTA UMD3.1 coordinates (bp) # SNP Size (bp)
Angus1 1 1,712,261-2,013,659 11 301,398
Limousin 2 5,974,885-6,344,425 7 369,540
Brown Swiss 2 73,436,684-73,978,469 10 541,785
Hanwoo1 3 19,860,064-20,175,158 5 315,094
Hanwoo1 3 112,997,892-113,219,287 5 221,395
Brown Swiss 4 61,098,696-61,376,132 9 277,436
Hereford 6 70,655,812-70,865,694 6 209,882
Brown Swiss 62 75,830,633-76,696,893 9 866,260
Salers   75,996,320-76,696,893 8 700,573
Jersey 6 105,390,830-105,730,372 8 339,542
Limousin 7 40,250,259-40,485,825 7 235,566
Jersey 7 45,439,468-45,828,427 10 388,959
Holstein 7 72,908,532-73,126,315 7 217,783
Brown Swiss 11 25,577,969-25,941,999 10 364,030
Jersey 12 1,113,009-1,436,093 8 323,084
Angus1, Salers, Shorthorn, Simmental1 12 25,878,820-26,236,394 7 357,574
Brahman1 12 36,287,533-36,989,957 14 702,424
Holstein 13 15,456,721-15,683,571 6 226,850
Braunvieh 14 28,674,493-28,960,475 5 285,982
Brown Swiss 14 42,739,573-43,140,076 9 400,503
Braunvieh 16 39,714,165-39,898,049 3 389,103
Salers 16 43,200,419-43,618,684 9 418,265
Jersey 16 45,376,614-45,874,144 8 497,530
Angus1, Holstein, Limousin, Simmental1   45,425,579-45,874,144 7 448,565
Hereford   45,464,423-45,874,144 6 409,721
Hanwoo1 16 52,535,473-52,742,523 4 207,050
Hanwoo1 18 14,526,709-14,847,049 5 320,340
Limousin 19 37,301,353-37,520,214 6 218,861
Brahman1 19 43,376,032-43,835,219 10 459,187
Angus1, Holstein, Shorthorn 24 63,576-320,143 6 256,567
Braunvieh, Charolais, Finnish Ayrshire, Hanwoo1   105,589-320,143 5 214,554
Angus1, Holstein, Salers, Shorthorn 27 25,075,449-25,295,935 6 220,486
  1. 1These breeds were also genotyped with the AFFXB1P assay and allow the potential validation of these putative selective sweep regions.
  2. 2Call rates for some SNP within this region did not exceed the 85% threshold that was applied to the remaining data.
\