Table 5 Genomic regions predicted to harbour selective sweeps using BovineSNP50 data and validated by AFFXB1P data
From: Detection of selective sweeps in cattle using genome-wide SNP data
BTA | Breed | UMD3.1 coordinates (bp) | # Fixed SNP | # Variable SNP | Size (bp) | Annotations |
|---|---|---|---|---|---|---|
1 | Angus | 1,673,108-2,024,737 | 313 | 8 | 351,629 | Horn-polled [6] |
13 | Wagyu | 15,493,906-15,739,251 | 301 | 4 | 245,345 | DGKZ |
16 | Angus | 45,386,065-45,652,672 | 238 | 10 | 266,607 | ENO1, RERE |
Simmental | 45,386,065-45,677,279 | 280 | 6 | 291,214 | ||
16 | Simmental | 52,629,624-52,857,759 | 30 | 0 | 228,135 | C16H1orf159, RNF223, F1N376, AGRN, ISG15, HES4, C16H1orf170, PLEKHN1, KLHL17, NOC2L, SAMD11 |
Wagyu | 52,629,624-52,857,759 | 29 | 1 | 228,135 | ||
18 | Angus | 14,725,181-14,973,411 | 102 | 5 | 248,230 | TCF25, SPIRE2, MC1R, TUBB3, MIR220D, DEF8, CENPBD1, LOC532875, DBNDD1, GAS8, LOC100296324, LOC100336472, SHCBP1 |
Simmental | 14,725,181-14,973,411 | 104 | 3 | 248,230 |