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Table 5 Genomic regions predicted to harbour selective sweeps using BovineSNP50 data and validated by AFFXB1P data

From: Detection of selective sweeps in cattle using genome-wide SNP data

BTA Breed UMD3.1 coordinates (bp) # Fixed SNP # Variable SNP Size (bp) Annotations
1 Angus 1,673,108-2,024,737 313 8 351,629 Horn-polled [6]
13 Wagyu 15,493,906-15,739,251 301 4 245,345 DGKZ
16 Angus 45,386,065-45,652,672 238 10 266,607 ENO1, RERE
Simmental 45,386,065-45,677,279 280 6 291,214
16 Simmental 52,629,624-52,857,759 30 0 228,135 C16H1orf159, RNF223, F1N376, AGRN, ISG15, HES4, C16H1orf170, PLEKHN1, KLHL17, NOC2L, SAMD11
Wagyu 52,629,624-52,857,759 29 1 228,135
18 Angus 14,725,181-14,973,411 102 5 248,230 TCF25, SPIRE2, MC1R, TUBB3, MIR220D, DEF8, CENPBD1, LOC532875, DBNDD1, GAS8, LOC100296324, LOC100336472, SHCBP1
Simmental 14,725,181-14,973,411 104 3 248,230
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