From: An integrated genetic linkage map for white clover (Trifolium repens L.) with alignment to Medicago
T repens Locus | Annotation | Intron | Tr LG | Mt PM | Ref | Forward Primer (5'-3') Reverse Primer (5'-3') |
---|---|---|---|---|---|---|
TrPHR | MYB transcription factor | 1 | 2-2 | 2 | [36] | GTTGATGCTGTGGCTCAACTT CCCATAACTCTGAGGACCCCT |
 | Phosphorus transport |  |  |  |  |  |
TrCPS | Glutamine synthase | 2 | 3-1 | 3 | [37] | TGGATCAGGTTTGGACTTGAG GGAAGCTGTGAAGGGTCAGTA |
 | In planta nitrogen cycling |  |  |  |  |  |
TrMIP | Myo inositiol 1-P- synthase | 9 | 3-1 | 3 | [38] | GTTATCTGACCAAGGCTCCTCTG ACCACTGGTGTGCCCGGTGGAAC |
 | Pinitol synthesis |  |  |  |  |  |
TrLFY | LEAFY | 1 | 3-2 | 3 | [39] | TCTCGATGCTCTCTCTCAAGAAG TCGCTGCACCACCGGCTCCTCCG |
 | Flowering |  |  |  |  |  |
TrPLT1 | PLETHORA | 6 | 4-2 | 4 | [40] | GTGAGCTTCATACCTTCCAGTCC AAGAACTTCGATATATCGCGGTG |
 | Root growth |  |  |  |  |  |
TrSHP - 2 | SHATTERPROOF9 | 2 | 4-2 | 4 | [41] | GAGGTACAAGAAAGCATGTTCAG CTTCAAGTATTCACGGTAACTGC |
 | Dehiscence |  |  |  |  |  |
TrSHP - 8 | SHATTERPROOF9 | 9 | 4-2 | 4 | [41] | AAAGCATGTTCAGATTCTTCTGG GCAGTTTGGCAGCTTCTTGCTGG |
 | Dehiscence |  |  |  |  |  |
TrPRP | ROOT PHOTOTROPISM2 | 3 | 5-2 | 5 | [42] | AATCGACGATGATCTTTACCGCGCCG TTTGTTCTGTGACGCGTGCACACG |
 | Root growth |  |  |  |  |  |
TrDFR | Dihydroflavonol reductase (DFR) | 1 | 6-1 | 2 | [43] | CATTGGAAGAGTTAGAGATTTAG TCCAACTTCCATAAATGTTCAAC |
 | Condensed Tannin |  |  |  |  |  |
TrIAA | SOLITARY ROOT | 4 | 6-1 | 2 | [44] | TGAAAGGCTCTGATGCAATTGGG CTAGATTTTTCCATTGCTCTTGG |
 | Root growth |  |  |  |  |  |
TrSEP1 | SEPELLATA1 | 2 | 7-1 | 7 | [45] | GCAAACCTGCTAAAGAACTTGAG CTTCAAGTATTCACGGTAACTGC |
 | Floral initiation |  |  |  |  |  |
TrTT12 | TRANSPARENT TESTA12 | 3 | 7-1 | 7 | [46] | CAGATCCAAAGTTGGAGACATCGG AGCCCATAGGATATGGTGAAGTGC |
 | Condensed Tannin |  |  |  |  |  |
TrRMS5 | RAMOSUS5 | 6 | 7-2 | 7 | [47] | GGCGAAGAAGAAGATGATGG CATCTCTGCATTGAGGTAGCA |
 | Branching |  |  |  |  |  |
TrAlaAT | ACC SYNTHASE1 | 6 | 8-2 | 8 | [48] | AACTGGTGCCTATAGTCATAGTC GCTATTGTATCACGTAAACCCTG |
 | Flowering |  |  |  |  |  |
TrVP1 | Clover orthologue of AVP1 | 5 | 8-2 | 8 | [49] | ACTGAATACTATACCAGCAATGC TGCAGGAGTCTGCAACATCTTGC |
 | Drought tolerance |  |  |  |  |  |
TrPPD | PEAPOD | 2 | 1-1 1-2 | no hit | [50] | GATATCGTGAAAAGCGAAAGGAC AGCTTCACTGGAAGGTTCAAATA |
 | Leaf meristem activity |  |  |  |  |  |
TrANR | Anthocyanidin reductase (ANR) | 1 | 4-2 | no hit | [51] | GAGTGCATGTTTGGTTTGCCA TGCAAAGTTCACAGGTGTAGC |
 | Condensed tannin |  |  |  |  |  |
TrSTP | STAMINA PISTILLOIDIA | n/i | 4-1 | AC235671 | [52] | TGGAAGGTTTTCACCCATCTATG TATCCTGCTGTTCATCCATGGAG |
 | Flowering |  |  |  |  |  |