De novotranscriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

BMC Genomics

Table 1 General statistics of grape V1 annotations and contig assemblies

	Grape V1 annotation	Velvet assembly	Oases deconvolution	CdHit Clustering
Number of sequences	29971	172826	140862	106670
Maximum length	40713	3541	18312	18312
Minimum length	18	200	200	200
Average	1331.07	345.57	1392.25	1307.56
Median	1126	282	1022.36	917
N50	1755	347	2163	2098
N90	738	219	678	607

Assembly was performed with Velvet and Oases. Clustering was carried out using CdHit.

ISSN: 1471-2164