Table 5 KOG functional classification of C. sinensis transcripts
From: Global transcriptome profiles of Camellia sinensis during cold acclimation
Description | Code | Transcript (n) |
|---|---|---|
1 Information storage and processing | ||
Translation, ribosomal structure and biogennesis | J | 1,812 |
RNA processing and modification | A | 1,729 |
Transcription | K | 2,341 |
Replication, recombination and repair | L | 1,194 |
Chromation structure and dynamics | B | 706 |
2 Cellular processing and signaling | ||
Cell cycle control, cell division, chromosome partitioning | D | 1,091 |
Nuclear structute | Y | 274 |
Defense mechanisms | V | 385 |
Signal transduction mechanisms | T | 4,836 |
Cell wall/membrane/envelope biogenesis | M | 558 |
Cell motility | N | 24 |
Cytoskeleton | Z | 1,072 |
Extracellular structure | W | 187 |
Intracellular trafficking, secretion, and vesicular transport | U | 2,289 |
Posttranslational modification, protein turnover, chaperones | O | 4,152 |
3 Metabolism | ||
Energy production and conversion | C | 1,800 |
Carbohydrate transport and metabolism | G | 2,387 |
Amino acid transport and metabolism | E | 1,514 |
Nucleotide transport and metabolism | F | 432 |
Coenzyme ransport and metabolism | H | 343 |
Lipid ransport and metabolism | I | 1,440 |
Inorganic ion ransport and metabolism | P | 1,159 |
Secondary metabolites biosynthesis, transport and catabolism | Q | 1,428 |
4 Poorly characterized | ||
General function prediction only | R | 11,108 |
Function unknown | S | 2,030 |