Table 3 SNPs causing gain or loss of start and stop codons in P. aeruginosa clone CHA genomes
From: Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB
Locus_tag | SNP-pos.a | SNP | Pos. in aa-seq. | Length of aa-seq. | Annotation |
|---|---|---|---|---|---|
Clone CHA [CHA, PT22 and 491] common SNPs – stop codons gained: | |||||
PA0089 | 325546 | C-T | 308 | 321 | Transcriptional activator GpuR |
PA1261 | 1369435 | G-A | 220 | 225 | Probable transcriptional regulator |
PA1427 | 1553550 | G-T | 147 | 188 | Hypothetical protein |
PA2691 | 3045894 | G-A | 87 | 402 | Conserved hypothetical protein |
PA4482 | 5013957 | C-A | 96 | 97 | Glu-tRNA(Gln) amidotransferase subunit C |
PA4982 | 5598104 | G-A | 58 | 999 | Probable two-component sensor |
PA5342 | 6010696 | C-T | 121 | 267 | Probable transcriptional regulator |
PA5353 | 6020049 | G-A | 356 | 409 | Glycolate oxidase subunit GlcF |
Clone CHA [CHA, PT22 and 491] common SNPs - stop codons lost: | |||||
PA2456 | 2756650 | A-G | 114 | 114 | Hypothetical protein |
PA2566 | 2900372 | T-G | 396 | 396 | Conserved hypothetical protein |
PA6439 | 5206722 | A-G | 96 | 96 | Hypothetical protein |
Clone CHA [CHA, PT22 and 491] common SNPs - start codons lost: | |||||
PA0819 | 895825 | T-C | 1 | 98 | Hypothetical protein |
PA2778 | 3136962 | A-G | 1 | 292 | Hypothetical protein |
PA5525 | 6218101 | T-C | 1 | 247 | Probable transcriptional regulator |
Divergent nucleotide exchange – stop codon gained: | |||||
PA0977 | 1060555 | A-C/T | 93 | 108 | Hypothetical protein |
| Â | Â | A-C in strains PT22 and 491, A-T in strain CHA | |||
Strain-specific SNPs in strain CHA only - stop codons gained: | |||||
PA0734 | 802084 | C-T | 52 | 91 | Hypothetical protein |
PA5487 | 6178179 | T-A | 625 | 672 | Hypothetical protein |