Skip to main content

Table 3 SNPs causing gain or loss of start and stop codons in P. aeruginosa clone CHA genomes

From: Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB

Locus_tag SNP-pos.a SNP Pos. in aa-seq. Length of aa-seq. Annotation
Clone CHA [CHA, PT22 and 491] common SNPs – stop codons gained:
PA0089 325546 C-T 308 321 Transcriptional activator GpuR
PA1261 1369435 G-A 220 225 Probable transcriptional regulator
PA1427 1553550 G-T 147 188 Hypothetical protein
PA2691 3045894 G-A 87 402 Conserved hypothetical protein
PA4482 5013957 C-A 96 97 Glu-tRNA(Gln) amidotransferase subunit C
PA4982 5598104 G-A 58 999 Probable two-component sensor
PA5342 6010696 C-T 121 267 Probable transcriptional regulator
PA5353 6020049 G-A 356 409 Glycolate oxidase subunit GlcF
Clone CHA [CHA, PT22 and 491] common SNPs - stop codons lost:
PA2456 2756650 A-G 114 114 Hypothetical protein
PA2566 2900372 T-G 396 396 Conserved hypothetical protein
PA6439 5206722 A-G 96 96 Hypothetical protein
Clone CHA [CHA, PT22 and 491] common SNPs - start codons lost:
PA0819 895825 T-C 1 98 Hypothetical protein
PA2778 3136962 A-G 1 292 Hypothetical protein
PA5525 6218101 T-C 1 247 Probable transcriptional regulator
Divergent nucleotide exchange – stop codon gained:
PA0977 1060555 A-C/T 93 108 Hypothetical protein
   A-C in strains PT22 and 491, A-T in strain CHA
Strain-specific SNPs in strain CHA only - stop codons gained:
PA0734 802084 C-T 52 91 Hypothetical protein
PA5487 6178179 T-A 625 672 Hypothetical protein
  1. a: position according to PAO1 reference sequence NC_002516.