Table 2 Distribution of the genome-mapped sequence reads in small RNA libraries
Locus class | Fetal bovine muscle tissue | Adult bovine muscle tissue | ||
|---|---|---|---|---|
Unique sequences | Reads | Unique sequences | Reads | |
Total | 688055 (100%) | 15454182 (100%) | 188906 (100%) | 13558164 (0.00%) |
miRNA | 5073 (0.74%) | 9512581 (61.55%) | 2492 (1.32%) | 11750980 (86.67%) |
exon_antisense | 734 (0.11%) | 893 (0.01%) | 105 (0.06%) | 186 (0.00%) |
exon_sense | 72597 (10.55%) | 79779 (0.52%) | 19608 (10.38%) | 21223 (0.16%) |
intron_antisense | 5624 (0.82%) | 8081 (0.05%) | 646 (0.34%) | 1094 (0.01%) |
intron_sense | 26620 (3.87%) | 34148 (0.22%) | 3315 (1.75%) | 4799 (0.04%) |
rRNA | 107912 (15.68%) | 2213269 (14.32%) | 36130 (19.13%) | 324351 (2.39%) |
repeat | 47495 (6.90%) | 95063 (0.62%) | 5612 (2.97%) | 11922 (0.09%) |
scRNA | 696 (0.10%) | 18870 (0.12%) | 235 (0.12%) | 3171 (0.02%) |
snRNA | 5023 (0.73%) | 17415 (0.11%) | 1062 (0.56%) | 2048 (0.02%) |
snoRNA | 3330 (0.48%) | 13414 (0.09%) | 667 (0.35%) | 2846 (0.02%) |
srpRNA | 2034 (0.30%) | 28132 (0.18%) | 611 (0.32%) | 2262 (0.02%)) |
tRNA | 24410 (3.55%) | 251226 (1.63%) | 7375 (3.90%) | 41391 (0.31%) |
unknown | 386507 (56.17%) | 3181311 (20.59%) | 111048 (58.78%) | 1391891 (10.27%) |