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Table 2 KEGG pathways identified using genes differentially expressed under nitrogen stress

From: Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules

KEGG pathway KEGG ID Size* p-value q-value
Up
Glycine, serine and threonine metabolism msm00260 41 0.0002 0.0243
Tyrosine metabolism msm00350 41 0.0003 0.0243
Down
Carotenoid biosynthesis msm00906 3 0.0000 0.0000
Geraniol degradation msm00281 72 0.0002 0.0025
Benzoate degradation msm00362 94 0.0002 0.0025
Vitamin B6 metabolism msm00750 6 0.0006 0.0069
Propanoate metabolism msm00640 94 0.0015 0.0162
Peptidoglycan biosynthesis msm00550 16 0.0022 0.0223
Valine, leucine and isoleucine degradation msm00280 91 0.0025 0.0238
One carbon pool by folate msm00670 14 0.0031 0.0247
Fatty acid metabolism msm00071 94 0.0032 0.0247
Terpenoid backbone biosynthesis msm00900 23 0.0040 0.0259
Phenylalanine, tyrosine and tryptophan biosynthesis msm00400 27 0.0087 0.0470
  1. KEGG enrichment analysis on all DE genes at 10 vs 12 hours. Pathways shown are significant under a one-tailed Fisher’s exact test at a FDR of 5%. *Size denotes number of genes on the microarray mapped to that KEGG pathway.