|
Virus
|
Average depth
|
Maximum depth
|
Depth at SNP
|
% variant
|
Position (genome)
|
Gene (Position)
|
Nuc cons
|
Nuc variant
|
AA cons
|
AA variant
|
AA residue
|
|---|
|
Brain tissue samples
| | | | | |
|
RV437
|
44
|
103
|
60
|
8
|
2768
|
M (275)
|
T
|
C
|
Leu
|
Ser
|
92
|
|
63
|
3
|
2781
|
M (288)
|
T
|
C
|
Val
|
Val
|
96
|
|
55
|
51
|
3049
|
M (556)
|
T
|
C
|
Leu
|
Phe
|
186
|
|
28
|
18
|
4403
|
G (1090)
|
T
|
C
|
Leu
|
Leu
|
364
|
|
28
|
7
|
7855
|
L (2451)
|
C
|
T
|
Asn
|
Asn
|
817
|
|
RV2417
|
35.5
|
81
|
NA
| | | | | | | | |
|
RV61
|
53.2
|
165
|
34
|
18
|
3503
|
G (209)
|
C
|
T
|
Ile
|
Thr
|
70
|
|
RV2508
|
17
|
53
|
17
|
23
|
9523
|
L (4128)
|
A
|
G
|
Ser
|
Ser
|
1376
|
|
RV2627
|
17.7
|
46
|
NA
| | | | | | | | |
|
RV2516
|
16.5
|
43
|
NA
| | | | | | | | |
|
RV50
|
8.6
|
16
|
11
|
27
|
11349
|
L (5944)
|
C
|
G
|
Asn
|
Asp
|
1982
|
|
RV2772
|
14.5
|
31
|
13
|
38
|
1293
|
N (1223)
|
A
|
G
|
Lys
|
Arg
|
408
|
|
22
|
5
|
8179
|
L (2771)
|
T
|
A
|
Phe
|
Tyr
|
924
|
|
Cultured virus samples
| | | | | |
|
RV2324
|
65
|
272
|
47
|
11
|
3490
|
G (175)
|
G
|
A
|
Glu
|
Lys
|
59
|
|
47
|
21
|
3491
|
G (176)
|
A
|
G
|
Glu
|
Gly
|
59
|
|
42
|
31
|
3711
|
G (396)
|
C
|
A
|
His
|
Gln
|
132
|
|
44
|
25
|
4103
|
G (788)
|
A
|
G
|
Gln
|
Arg
|
263
|
|
36
|
11
|
8376
|
L (2967)
|
C
|
T
|
Asp
|
Asp
|
989
|
|
RV1787 combined
|
4.3
|
11
|
4
|
25
|
2679
|
M (170)
|
G
|
A
|
Gly
|
Glu
|
57
|
|
RV20 combined
|
156
|
277
|
107
|
2
|
346
|
N (276)
|
C
|
A/T
|
Tyr
|
*/Tyr
|
92
|
|
87
|
2
|
1621
|
P (105)
|
T
|
C
|
Ser
|
Ser
|
35
|
|
81
|
2
|
1669
|
P (153)
|
G
|
A
|
Glu
|
Glu
|
51
|
|
77
|
3
|
1710
|
P (194)
|
A
|
T
|
Gln
|
Leu
|
65
|
|
93
|
39
|
3143
|
M-G (NA)
|
C
|
T
|
NA
|
NA
|
NA
|
|
103
|
2
|
3671
|
G (356)
|
G
|
A
|
Trp
|
*
|
119
|
|
96
|
2
|
4403
|
G (1087)
|
T
|
C
|
Cys
|
Arg
|
363
|
|
94
|
37
|
4584
|
G (1268)
|
T
|
C
|
Met
|
Thr
|
423
|
|
95
|
2
|
6217
|
L (766)
|
T
|
C
|
Ser
|
Pro
|
256
|
|
134
|
1
|
7910
|
L (2459)
|
T
|
C
|
Ile
|
Thr
|
820
|
|
107
|
2
|
8244
|
L (2793)
|
C
|
A
|
Ser
|
Arg
|
931
|
| | | |
106
|
2
|
8473
|
L (3022)
|
A
|
G
|
Thr
|
Ala
|
1008
|
- NA = not applicable as no SNPs were observed. * stop codon.
