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Table 1 Comparison of the proportion of known repeats in SD13M with the values for the entire genome and average values for SDs

From: Identification of both copy number variation-type and constant-type core elements in a large segmental duplication region of the mouse genome

Repeat Ratio in SD13M (%) Segmental duplication average (%) [18] Whole genome average (%) [18]
DNA 0.18 0.36 0.86
LINE 23.9 34.4 20.3
Low_complexity 0.82 0.58 0.79
LTR 18.3 19.5 10.2
Satellite (MMSAT4) 1.92 0.32 0.05
Simple_repeat 1.94 1.66 2.47
SINE 5.20 3.80 7.42
snRNA 0.00 0.01 0.01
tRNA 0.01 0.01 0.01
Unknown (MurSatRep) 5.97 0.54 0.05
Total 58.2 61.2 42.2