Table 1 Comparison of the proportion of known repeats in SD13M with the values for the entire genome and average values for SDs
Repeat | Ratio in SD13M (%) | Segmental duplication average (%) [18] | Whole genome average (%) [18] |
|---|---|---|---|
DNA | 0.18 | 0.36 | 0.86 |
LINE | 23.9 | 34.4 | 20.3 |
Low_complexity | 0.82 | 0.58 | 0.79 |
LTR | 18.3 | 19.5 | 10.2 |
Satellite (MMSAT4) | 1.92 | 0.32 | 0.05 |
Simple_repeat | 1.94 | 1.66 | 2.47 |
SINE | 5.20 | 3.80 | 7.42 |
snRNA | 0.00 | 0.01 | 0.01 |
tRNA | 0.01 | 0.01 | 0.01 |
Unknown (MurSatRep) | 5.97 | 0.54 | 0.05 |
Total | 58.2 | 61.2 | 42.2 |