|
Trait
|
Chromosome
|
SNPs
|
Position
|
Alleles
|
MAF1
|
P_value2
|
P_adjust3
|
R2 4
|
Nearest Gene
|
Distance (Kb)5
|
|---|
|
DMBr
|
2
|
Gga_rs14206277
|
78152161
|
G/A
|
0.338
|
2.01E-05
|
0.34
|
0.071
|
FAM105A
|
within
|
|
DMTh
|
14
|
Gga_rs14086206
|
14720651
|
A/G
|
0.340
|
8.38E-05
|
1.40
|
0.077
|
TBC1D24
|
D 20.6
|
|
DMBr
|
Z
|
GGaluGA346234
|
1626487
|
G/A
|
0.016
|
1.16E-05
|
0.19
|
0.075
|
ST8SIA5
|
within
|
|
IMFBr
|
1
|
Gga_rs13878108
|
65617257
|
G/A
|
0.240
|
6.49E-05
|
1.09
|
0.063
|
MGST1
|
D 183.1
|
|
IMFBr
|
3
|
GGaluGA217414
|
40654853
|
A/G
|
0.116
|
9.30E-05/2.59E-06
|
1.56
|
0.061
|
NTPCR
|
U 109.9
|
|
IMFBr
|
4
|
GGaluGA255658
|
43311293
|
G/A
|
0.100
|
3.46E-05/5.61E-09
|
0.58
|
0.057
|
AGA
|
U 330.8
|
|
IMFBr
|
5
|
Gga_rs14524377
|
27009717
|
G/A
|
0.193
|
5.41E-05
|
0.91
|
0.066
|
TYRO3
|
U 73.6
|
|
IMFBr
|
Z
|
GGaluGA348872
|
18701354
|
A/G
|
0.025
|
2.14E-05/4.28E-07
|
0.36
|
0.059
|
KIF2A
|
U 122.3
|
|
Meat color
| | | | | | | | | |
|
L*
|
2
|
GGaluGA137635
|
23472767
|
A/G
|
0.302
|
7.04E-05
|
1.18
|
0.068
|
COL1A2
|
U 58.0
|
|
L*
|
18
|
GGaluGA121429
|
6990031
|
C/A
|
0.412
|
8.96E-05
|
1.50
|
0.065
|
KPNA2
|
U 0.2
|
|
L*
|
18
|
GGaluGA121456
|
7112093
|
G/A
|
0.383
|
7.19E-05
|
1.21
|
0.068
|
PSMD12
|
U 34.3
|
|
b*
|
27
|
Gga_rs15237721
|
1597620
|
G/A
|
0.364
|
4.85E-05
|
0.81
|
0.077
|
FTSJ3
|
U 2.4
|
|
Skin color
| | | | | | | | | | |
|
L*
|
2
|
GGaluGA159190
|
99182734
|
G/A
|
0.122
|
7.62E-05
|
1.28
|
0.073
|
PTPN2
|
U 130.6
|
|
L*
|
13
|
Gga_rs14058862
|
10586210
|
A/G
|
0.114
|
9.39E-05
|
1.57
|
0.071
|
SPINK5
|
U 28.1
|
|
L*
|
13
|
Gga_rs15697794
|
11284741
|
G/A
|
0.049
|
9.61E-05
|
1.61
|
0.058
|
CLINT1
|
U 15.6
|
|
L*
|
21
|
Gga_rs16180462
|
3645146
|
G/A
|
0.162
|
8.76E-05
|
1.47
|
0.072
|
PGD
|
U 62.7
|
|
a*
|
19
|
Gga_rs15044922
|
2083895
|
G/A
|
0.213
|
5.10E-05
|
0.85
|
0.077
|
MIR1587
|
D 301.0
|
|
b*
|
6
|
GGaluGA305921
|
33306370
|
A/G
|
0.412
|
3.24E-05
|
0.54
|
0.089
|
BUB3
|
D 195.5
|
- 1MAF minor allele frequency; 2the bold p-values of SNPs are the genome-wide significance by the general linear model (GLM); 3p-adjust indicates the p-value adjusted by “LD adjusted” Bonferroni; 4R2, SNP indicates the ratio of phenotypic variation; 5U indicates that the SNP is upstream of the gene, while D indicates that the SNP is downstream of the gene. These abbreviations are also used in Table 3.
