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Table 3 Location of and gene information for SNPs associated (P < 1 × 10 -4 ) with abdominal fat traits

From: The identification of 14 new genes for meat quality traits in chicken using a genome-wide association study

Trait Chromosome SNPs Position Alleles MAF P_value P_adjust R2 Nearest Gene Distance (Kb)
AbFW 3 Gga_rs14385159 83714232 A/G 0.248 4.79E-05 0.80 0.052 COL12A1 D 65.5
AbFW 4 Gga_rs15634423 85973459 A/G 0.203 1.22E-05 0.20 0.059 MXD4 D 82.4
AbFW 4 Gga_rs16445604 86019649 A/G 0.239 8.28E-05 1.39 0.049 MXD4 D 128.6
AbFW 6 Gga_rs14564481 5917270 A/G 0.121 7.03E-05/4.11E-07 1.18 0.050 RET within
AbFW 22 Gga_rs14708241 2145071 G/A 0.104 4.46E-05/2.34E-07 0.75 0.052 LOC431251 U 124.3
AbFP 2 Gga_rs15112628 68073875 A/G 0.223 9.62E-05 1.61 0.059 FOXC1 U 124.7
AbFP 2 Gga_rs13710186 68939093 G/A 0.166 3.53E-05 0.59 0.066 VPS4B U 63.6
AbFP 2 Gga_rs14201030 69308190 G/A 0.290 8.49E-05 1.42 0.060 BCL2 D 160.4
AbFP 4 Gga_rs15634423 85973459 A/G 0.203 6.37E-05 1.07 0.062 MXD4 D 82.4
AbFP 5 GGaluGA276197 15378139 G/A 0.132 6.59E-05 1.10 0.062 BRSK2 U 54.0
AbFP 6 Gga_rs14564481 5917270 A/G 0.121 4.88E-05/2.62E-08 0.82 0.064 RET within
AbFP 21 Gga_rs14285437 5764093 A/G 0.247 6.40E-05 1.07 0.062 NPPB within
AbFP 21 Gga_rs14285449 5774061 G/A 0.258 7.30E-05 1.22 0.061 NPPB D 8.3
AbFP 22 Gga_rs14708241 2145071 G/A 0.104 9.23E-06/6.58E-08 0.15 0.075 LOC431251 U 124.3
AbFP 14 GGaluGA101040 4941190 G/A 0.245 9.94E-05 1.67 0.059 SREBF1 D 6.3