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Table 3 Location of and gene information for SNPs associated (P < 1 × 10 -4 ) with abdominal fat traits

From: The identification of 14 new genes for meat quality traits in chicken using a genome-wide association study

Trait

Chromosome

SNPs

Position

Alleles

MAF

P_value

P_adjust

R2

Nearest Gene

Distance (Kb)

AbFW

3

Gga_rs14385159

83714232

A/G

0.248

4.79E-05

0.80

0.052

COL12A1

D 65.5

AbFW

4

Gga_rs15634423

85973459

A/G

0.203

1.22E-05

0.20

0.059

MXD4

D 82.4

AbFW

4

Gga_rs16445604

86019649

A/G

0.239

8.28E-05

1.39

0.049

MXD4

D 128.6

AbFW

6

Gga_rs14564481

5917270

A/G

0.121

7.03E-05/4.11E-07

1.18

0.050

RET

within

AbFW

22

Gga_rs14708241

2145071

G/A

0.104

4.46E-05/2.34E-07

0.75

0.052

LOC431251

U 124.3

AbFP

2

Gga_rs15112628

68073875

A/G

0.223

9.62E-05

1.61

0.059

FOXC1

U 124.7

AbFP

2

Gga_rs13710186

68939093

G/A

0.166

3.53E-05

0.59

0.066

VPS4B

U 63.6

AbFP

2

Gga_rs14201030

69308190

G/A

0.290

8.49E-05

1.42

0.060

BCL2

D 160.4

AbFP

4

Gga_rs15634423

85973459

A/G

0.203

6.37E-05

1.07

0.062

MXD4

D 82.4

AbFP

5

GGaluGA276197

15378139

G/A

0.132

6.59E-05

1.10

0.062

BRSK2

U 54.0

AbFP

6

Gga_rs14564481

5917270

A/G

0.121

4.88E-05/2.62E-08

0.82

0.064

RET

within

AbFP

21

Gga_rs14285437

5764093

A/G

0.247

6.40E-05

1.07

0.062

NPPB

within

AbFP

21

Gga_rs14285449

5774061

G/A

0.258

7.30E-05

1.22

0.061

NPPB

D 8.3

AbFP

22

Gga_rs14708241

2145071

G/A

0.104

9.23E-06/6.58E-08

0.15

0.075

LOC431251

U 124.3

AbFP

14

GGaluGA101040

4941190

G/A

0.245

9.94E-05

1.67

0.059

SREBF1

D 6.3