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Table 2 Expression, in initiating storage roots and fibrous roots, of genes involved in meristem- and cell-division regulation

From: Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation

Contig Length ISR reads FR reads Annotation
Meristem regulation
S_PBL_10411 496.0 64.5 1.1 BAA31699.1 PKn2 [Ipomoea nil]
S_PBL_c8137 854.0 29.0 2.1 BAF93479.1 Class-I knotted1-like homeobox protein IBKN2 [Ipomoea batatas]
S_PBL_c9098 625.0 52.4 25.7 AAO33774.1 Knotted protein TKN4 [Lycopersicon esculentum] Class I knox
S_PBL_c11762 744.0 171.2 16.0 BAF93480.1 Class-I knotted1-like homeobox protein IBKN3 [Ipomoea batatas]
S_PBL_c31412 461.0 97.3 11.8 BAF93480.1 Class-I knotted1-like homeobox protein IBKN3 [Ipomoea batatas]
S_PBL_lrc34271 455.0 2.8 44.0 BO33481.1 Class II KNOX homeobox transcription factor [Medicago truncatula]
S_PBL_c5315 807.0 30.9 25.7 BAF95776.1 Class 2 knotted1-like protein [Nicotiana tabacum]
S_PBL_c6714 747.0 6.5 3.2 ABH03531.1 Class II knotted-like homeobox protein [Prunus persica]
S_PBL_c12444 767.0 644.5 809.3 NP_197904.1 KNAT3 [Arabidopsis thaliana] Class II KNOTTED1-like homeobox gene 3
Cell division regulation
S_PBL_c25867 444.0 18.7 0.0 BAA20410.1 A-type cyclin [Catharanthus roseus]
S_PBL_c32270 712.0 42.1 5.3 AAV41032.1 Cyclin D-like protein [Nicotiana tabacum]
S_PBL_c29324 408.0 213.3 336.7 EEF32676.1 Cyclin-L2, putative [Ricinus communis]
S_PBL_c3050 747.0 141.2 100.5 AAR01224.1 Cyclin T1 [Medicago truncatula]
S_PBL_c1272 1042.0 530.4 108.0 BAE06268.1 Cyclin-dependent kinase A1 [Scutellaria baicalensis]
S_PBL_c1655 489.0 44.9 3.2 EEF38677.1 Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
S_PBL_c33143 467.0 35.5 6.4 AAG01532.1 Cyclin-dependent kinase B1-1 [Nicotiana tabacum]
S_PBL_c27090 768.0 112.3 54.5 CAC51391.1 Cyclin dependent kinase C [Solanum lycopersicum]
S_PBL_c28094 482.0 81.4 11.8 ABN58480.1 Cyclin-dependent kinase [Actinidia chinensis]
  1. Expression is given as the normalized number of reads derived from the Illumina sequencing data as detailed in ‘Methods’. ISR, Initiating storage root, FR, Fibrous root.