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Table 5 Read count of contigs representing enzymes of the phenylpropanoid biosynthesis pathway in initiating storage roots and fibrous roots

From: Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation

Enzyme/contigs ISR reads FR reads
phenylalanine ammonia-lyase (PAL; EC 4.3.1.24)   
S_PBL_c14873 230.1 3407.1
S_PBL_c18 905.5 11467.6
S_PBL_c18502 387.3 2829.8
S_PBL_2066 521.0 7128.4
S_PBL_21573 17.8 54.5
S_PBL_2312 344.2 3051.1
trans-cinnamate 4-monooxygenase (C4H; EC 1.14.13.11)   
S_PBL_lrc53776 125.3 2954.8
S_PBL_lrc53138 10.3 116.5
S_PBL_lrc53079 262.9 1090.4
S_PBL_lrc52110 345.2 6252.8
S_PBL_c98 434.0 4534.9
S_PBL_c2889 391.0 9808.5
S_PBL_c22453 285.3 1095.8
S_PBL_c18141 154.3 2287.8
S_PBL_c17334 707.2 2703.6
4-coumarate-CoA ligase (4CL; EC 6.2.1.12)   
S_PBL_c4746 63.6 421.2
S_PBL_c24867 50.5 162.5
S_PBL_c22722 70.2 388.1
S_PBL_c21439 56.1 305.7
S_PBL_c18044 29.9 379.5
S_PBL_c158 119.7 1904.0
S_PBL_c1395 52.4 149.7
S_PBL_c13368 18.7 56.7
quinate O-hydroxycinnamoyltransferase (EC 2.3.1.99)   
S_PBL_c20232 8.4 90.9
shikimate O-hydroxycinnamoyltransferase (HCT; EC 2.3.1.133)   
S_PBL_c8321 185.2 789.0
S_PBL_c657 3.7 93.0
S_PBL_c6051 58.0 346.4
S_PBL_c20232 8.4 90.9
S_PBL_c20009 85.1 1152.4
S_PBL_c17752 33.7 318.6
S_PBL_c15462 13.1 43.8
caffeoyl-CoA O-methyltransferase (CCoAOMT; EC 2.1.1.104)   
S_PBL_c6206 218.0 645.7
S_PBL_c3822 73.9 811.4
S_PBL_c2944 389.1 1204.8
S_PBL_c20480 148.7 1188.8
S_PBL_c12810 89.8 916.2
S_PBL_c30794 50.5 4.3
cinnamoyl-CoA reductase (CCR; EC 1.2.1.44)   
S_PBL_c8128 116.9 330.3
S_PBL_c5810 10499.1 30368.4
S_PBL_c2607 219.8 988.9
S_PBL_c21123 86.1 495.0
S_PBL_c19132 27.1 164.6
S_PBL_c10515 42.1 10.7
caffeate O-methyltransferase (COMT; EC 2.1.1.68)   
S_PBL_c978 98.2 405.2
S_PBL_c538 26.2 327.1
S_PBL_c20536 2.8 20.3
S_PBL_c29777 78.6 15.0
cinnamyl-alcohol dehydrogenase (CAD; EC 1.1.1.195)   
S_PBL_lrc54926 37.4 95.1
S_PBL_lrc54183 23.4 136.8
S_PBL_lrc53688 632.3 8881.6
S_PBL_lrc53173 17.8 96.2
S_PBL_lrc52706 599.6 2211.9
S_PBL_lrc52587 355.5 2451.3
S_PBL_lrc26619 6.5 21.4
S_PBL_c8094 178.7 1763.9
S_PBL_c27372 114.1 351.7
S_PBL_c22346 11.2 49.2
S_PBL_c21896 27.1 161.4
S_PBL_c21084 474.3 4448.3
S_PBL_c18369 225.4 776.1
S_PBL_c17373 29.0 139.0
S_PBL_c12615 328.3 2762.4
S_PBL_c20863 186.1 18.2
S_PBL_c17269 509.8 160.4
beta-glucosidase (EC 3.2.1.21)   
S_PBL_c6163 4.7 13.9
S_PBL_c41088 0.9 35.3
S_PBL_c29128 1.9 63.1
S_PBL_c25813 39.3 101.6
S_PBL_c12164 62.7 374.2
S_PBL_c13042 12.2 3.2
S_PBL_c23506 64.5 2.1
S_PBL_c7311 353.6 127.2
S_PBL_c25672 55.2 8.6
S_PBL_c11889 156.2 44.9
S_PBL_c50698 50.5 4.3
S_PBL_c27348 74.8 23.5
peroxidase (EC 1.11.1.7)   
S_PBL_lrc55044 107.6 314.3
S_PBL_lrc54488 8.4 81.2
S_PBL_lrc54403 413.5 1216.6
S_PBL_lrc54045 769.8 1999.1
S_PBL_lrc53204 427.5 1603.6
S_PBL_lrc53085 334.9 1066.9
S_PBL_lrc52151 4.7 24.6
S_PBL_c8312 44.9 1339.5
S_PBL_c750 82.3 267.3
S_PBL_c6142 1.9 275.8
S_PBL_c5935 2.8 23.5
S_PBL_c5844 586.5 2139.2
S_PBL_c4994 61.7 609.4
S_PBL_c48762 40.2 985.7
S_PBL_c44935 2.8 13.9
S_PBL_c39736 11.2 40.6
S_PBL_c34320 2.8 65.2
S_PBL_c29852 223.6 602.9
S_PBL_c29801 24.3 215.9
S_PBL_c29652 0.9 151.8
S_PBL_c2946 92.6 280.1
S_PBL_c22233 5.6 22.4
S_PBL_c22191 5.6 20.3
S_PBL_c2122 629.5 1831.3
S_PBL_c21120 1.9 88.7
S_PBL_c18854 25.3 93.0
S_PBL_c1825 22.4 182.8
S_PBL_c16766 14.0 60.9
S_PBL_c1640 39.3 2253.6
S_PBL_c15871 156.2 1221.9
S_PBL_c12624 42.1 143.3
S_PBL_c11598 79.5 299.3
S_PBL_c11410 97.3 457.6
S_PBL_c14485 116.9 32.1
S_PBL_c15642 66.4 9.6
S_PBL_c7505 95.4 32.1
S_PBL_c2035 1005.6 360.3
S_PBL_c11972 18.7 4.3
S_PBL_lrc54799 75.8 29.9
S_PBL_c4878 34.6 1.1
S_PBL_c4857 549.1 97.3
S_PBL_c10185 100.1 31.0
S_PBL_c17430 18.7 3.2
S_PBL_lrc54785 52.4 8.6
coniferyl-alcohol glucosyltransferase (EC 2.4.1.111)   
S_PBL_c1688 61.7 420.1
S_PBL_c16389 61.7 1024.2
S_PBL_c13307 580.9 4191.7
coniferin beta-glucosidase (EC 3.2.1.126)   
S_PBL_c25672 55.2 8.6
  1. ISR, Initiating storage root; FR, Fibrous root. Enzyme annotation was obtained from the sequence annotation and GO classification data.