Table 5 Classification of de novo identified putative repeat sequences
From: KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella
Repeat type | No. of putative repeat sequences by Repeat Scout | Repeat Masker result | |||
|---|---|---|---|---|---|
No. of copies | Masked bases (Kbp) | Percentage of masked bases (%) | |||
Transposon | LINE/SINE | 1,776 | 135,174 | 24,072.6 | 6.60% |
LTR | 482 | 12,451 | 2,642.4 | 0.72% | |
DNA | 61 | 15,994 | 3,825.6 | 1.05% | |
Others | 80 | 28,354 | 3,187.7 | 0.87% | |
Unclassified | 3,911 | 601,647 | 84,920.6 | 23.27% | |
Total | 6,310 | 893,620 | 118,649.0 | 32.51% | |