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Table 3 Affymetrix SNP array genotype concordance metrics

From: Variant discovery in targeted resequencing using whole genome amplified DNA

Dataset

NRS

NRD

WGA whole-exome capture SNPs

97.78

1.30

Genomic whole-exome capture SNPs

97.66

1.60

WGA chr12 capture SNPs

82.60

22.20

Genomic chr12 capture SNPs

83.00

22.60

  1. NRS and NRD values for whole-exome and chr12 capture call sets when comparing to Affymetrix 6.0 genotypes.
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BMC Genomics

ISSN: 1471-2164

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