Figure 3

Abundance and distribution of the dn OST transcript assembly compared to the Brachypodium genome. SSR-bearing oat transcripts were distributed throughout the Brachypodium genome. External track shows Brachypodium gene density in both + (outside) and - (inside) strands in blue. In between both is the heat map of overall gene density. The middle track shows the density of the hits of oat alignments to Brachypodium, in both + (outside) and - (inside) strands (purple). Both Brachypodium and oat tracks are represented at the same scale. Inner-most track shows where the oat SSR-bearing transcripts align to Brachypodium genome sequence (red circles). Window size is 250 kb.