Table 6 ChIP-Seq and RNA-Seq data reveals genes potentially regulated by NAC transcription factor
| Â | Â | Stage 3 | Stage 6 | Â | Â | Â |
|---|---|---|---|---|---|---|
Gene model | Motif | (RPKM) | (RPKM) | Regulation | P-value | Annotation |
Glyma01g00980.1 | Motif1 | 7.7 | 2.1 | Down | 0.0013 | RNA polymerase Rpb2 |
Glyma01g38630.1 | Motif1 | 2.2 | 0.15 | Down | 1.23E-18 | Cytochrome P450 |
Glyma01g42840.1 | Motif3 | 8.5 | 10.7 | Up | 0.00032 | Glutathione peroxidase |
Glyma02g06730.1 | Motif3 | 12.9 | 5.5 | Down | 0.01164 | Homeobox domain containing protein |
Glyma02g37130.1 | Motif2,3 | 0.17 | 0.45 | Up | 0.00182 | VQ motif containing protein |
Glyma02g42990.1 | Motif2 | 25.9 | 1.4 | Down | 9.27E-15 | Polyketide cyclase / dehydrase |
Glyma02g45000.1 | Motif3 | 11.8 | 4.4 | Down | 0.01031 | SNF2 family protein |
Glyma03g05190.1 | Motif2 | 2.8 | 0.23 | Down | 3.37E-07 | Ferroportin1 (FPN1) |
Glyma04g08540.1 | Motif2 | 14.9 | 1.7 | Down | 9.49E-11 | RBD/RNP domain containing protein |
Glyma04g13490.1 | Motif1 | 31.8 | 74.6 | Up | 1.79E-06 | Pectin methylesterase inhibitor |
Glyma06g02640.1 | Motif1 | 5.4 | 1.1 | Down | 1.79E-08 | Protein of unknown function |
Glyma06g03070.1 | Motif1 | 20.4 | 9.02 | Down | 0.03693 | Transcription initiation factor IIF |
Glyma06g16700.1 | Motif1 | 19.9 | 30.7 | Up | 0.00936 | GTP-binding protein |
Glyma07g04690.1 | Motif1 | 12.8 | 4.6 | Down | 0.00608 | No Functional Annotation |
Glyma07g05700.2 | Motif1 | 6.2 | 27.5 | Up | 6.42E-12 | No Functional Annotation |
Glyma07g06660.1 | Motif1 | 75.8 | 352 | Up | 2.01E-17 | No Functional Annotation |
Glyma07g07950.1 | Motif3 | 16.3 | 6.8 | Down | 0.04714 | DEAD/DEAH box helicase |
Glyma07g38880.1 | Motif2 | 10.8 | 2.1 | Down | 6.23E-05 | Adenosine/AMP deaminase |
Glyma08g23850.1 | Motif3 | 20.4 | 3.8 | Down | 0.0001 | RBD/RNP domain containing protein |
Glyma10g32120.1 | Motif1 | 1.1 | 0.21 | Down | 2.42E-07 | No Functional Annotation |
Glyma12g09540.1 | Motif1 | 9.2 | 3.2 | Down | 0.01295 | Sec23/Sec24 zinc finger |
Glyma13g27730.1 | Motif3 | 3.8 | 36.8 | Up | 6.69E-18 | No Functional Annotation |
Glyma13g42330.1 | Motif3 | 315 | 1129 | Up | 8.19E-13 | Lipoxygenase |
Glyma15g18640.1 | Motif1 | 10.7 | 6.4 | Down | 4.28E-06 | No Functional Annotation |
Glyma16g05210.1 | Motif1 | 3.4 | 1.2 | Down | 0.02271 | SET domain containing protein |
Glyma16g27900.3 | Motif1 | 1.1 | 0.01 | Down | 3.73E-09 | No Functional Annotation |
Glyma19g02030.1 | Motif2 | 1.7 | 3.5 | Up | 0.00195 | Phosphoglucose isomerase |
Glyma19g42490.1 | Motif1 | 1.6 | 0.31 | Up | 1.55E-07 | No Functional Annotation |
Glyma20g24810.1 | Motif1 | 9.4 | 0.06 | Down | 5.66E-41 | Cytochrome P450 |
Glyma20g27710.1 | Motif2 | 0.97 | 0.37 | Down | 0.00576 | Protein tyrosine kinase |
Glyma20g28640.1 | Motif1 | 46.9 | 8.5 | Down | 9.98E-09 | Cupin domain containing protein |