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Table 1 Characteristics of newly sequenced phages

From: Genomic characterization provides new insight into Salmonella phage diversity

Phage

Farm

Salmonella serovar host

Genome size (kb)

GC %

Phage cluster2

Putative family3

Putative life cycle5

Related Salmonella phage

GenBank accession no.

FSL SP-030

8

Dublin

59

56.6

1

Siphoviridae

temperate

SPN19

KC139519

FSL SP-039

8

Cerro

59

56.6

1

Siphoviridae

temperate

SPN19

KC139514

FSL SP-088

10

Typhimurium

59

56.4

1

Siphoviridae

temperate

SPN19

KC139512

FSL SP-099

13

Newport

59

56.6

1

Siphoviridae

temperate

SPN19

KC139667- KC139680

FSL SP-019

3

Newport

59

56.4

1

Siphoviridae

temperate

SPN19

KC139571- KC139631

FSL SP-124

15

Cerro

59

56.5

1

Siphoviridae

temperate

SPN19

KC139515

FSL SP-029

8

Dublin

158

45.0

2

Myoviridae

virulent

V01, SFP10

KC139560- KC139570

FSL SP-063

9

Dublin

156

44.9

2

Myoviridae

virulent

V01, SFP10

KC139522- KC139525

FSL SP-058

3

Dublin

72

39.6

3

Podoviridae

virulent

none

KC139517

FSL SP-076

9

Dublin

72

39.5

3

Podoviridae 4

virulent

none

KC139520

FSL SP-010

2

Mbandaka

87

39.4

4

Myoviridae

virulent

Felix O1

KC139526- KC139542

FSL SP-012

1

Mbandaka

87

39.3

4

Myoviridae

virulent

Felix O1

KC139543- KC139556

FSL SP-107

13

Mbandaka

88

39.3

4

Myoviridae

virulent

Felix O1

KC139638- KC139648

FSL SP-031

8

Cerro

44

51.3

5

Siphoviridae

virulent

SE2, SS3e

KC139518

FSL SP-038

6

Cerro

42

51.1

5

Siphoviridae

virulent

SE2, SS3e

KC139652- KC139666

FSL SP-049

6

Cerro

43

50.9

5

Siphoviridae

virulent

SE2, SS3e

KC139557- KC139559

FSL SP-101

13

Dublin

41

50.2

5

Siphoviridae

virulent

SE2, SS3e

KC139511

FSL SP-0621

9

Newport

56

42.8

6

Siphoviridae 4

virulent

none

KC139632- KC139637

FSL SP-0691

9

Newport

56

42.8

6

Siphoviridae

virulent

none

KC139649- KC139651

FSL SP-004

1

Newport

30

52.8

7

Myoviridae 4

temperate

P2, PSP3

KC139521

FSL SP-126

15

Kentucky

51

42.9

8

Siphoviridae

virulent

T1

KC139513

FSL SP-016

2

Anatum

46

50.2

-

Siphoviridae

temperate

Gifsy-2, Fels-1

KC139516

  1. 1 FSL SP-062 and FSL SP-069 only differ in 4 single nucleotide polymorphisms; therefore, FSL SP-069 is a variant of FSL SP-062.
  2. 2 phage orthoclusters were determined based on presence/absence of orthologous genes.
  3. 3 putative families were determined in silico as described in Methods.
  4. 4 families were also confirmed by transmission electron microscopy.
  5. 5 presence of lysogeny module was used to identify the putative life cycle of a given phage isolate.
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BMC Genomics

ISSN: 1471-2164

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