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Table 3 Gene clusters in Salmo salar that are conserved across species

From: Discovery and characterization of miRNA genes in atlantic salmon (Salmo salar) by use of a deep sequencing approach

Ssa mir gene clusters

Copy # S. salar1

Dre-mir gene clusters

Copy # D. rerio2

Chrom. locations D. rerio3

Ssa-mir: 17–3, 18b, 19a-1, 20a-3, 19c-3, 92a-2

7 contigs

Dre-mir: 17a-1, 18a, 19a, 20a, 19b, 92a-1

2

1, 9

Ssa-mir: 18a, 20b

2 contigs

Dre-mir: 18c, 20b, 19c, 363

1

14

Ssa-mir: 462a, 731

1 contig

Dre-mir: 462, 731

1

8

Ssa-mir-222a-2, 221

1 contig

Dre-mir: 222a, 221

1

9

Ssa-mir: 106a-1, 93a-1, 25-1

6 contigs

Dre-mir: 93, 19d, 25

1

14

Ssa-mir: 194a-2, 192a-2, 192b

2 contigs

Dre-mir: 194a, 192

1

10

Ssa-mir: 183–3, 96–1, 182

4 contigs

Dre-mir: 183, 96, 182

1

4

Ssa-mir: 144, 451a-1, 451a-1

2 contigs

Dre-mir: 144, 451

1

5

Ssa-mir: 212a-1, 132-1

4 contigs

Dre-mir: 212, 132-1

1

15

Ssa-mir: 23a-4, 27a-1, 24b

9 contigs

Dre-mir: 23a-1, 27e, 24-4

6

22, 10, 3, 3, 2, 8

Ssa-mir: 430a, 430c, 430b

2 contigs

Dre-mir4: 430a-18, 430c-1, 430b-4 …

1

4

Ssa-mir: 130d-2, 301c

6 contigs

Dre-mir: 130c-1, 301c

2

10, 10

Ssa-mir: 99–1, let-7c-1

4 contigs

Dre-mir: 99–1, let-7c-1, 125c

2

15, 10,

Ssa-let: 7 g-1, 7a-5

4 contigs

Dre-let: 7e, 7a-5

2

23, 4

Ssa-let: 7a-1, let-7f

1 contig

Dre-let: 7a-1, 7f

1

11

Ssa-let: 7e-2, 7 h

2 contigs

Dre-let: 7 g-2, 7 h

2

23

Ssa-mir: 30d-1, 30a-4

5 contigs

Dre-mir: 30d, 30b

2

16, 13

Ssa-mir: 100a-1, 7-a-3

4 contigs

Dre-mir: 100–1, let-7a-2, 125b-1

2

15, 5

Ssa-mir: 15e, 16-a-2

4 contigs

Dre-mir: 15a-1, 16b

3

1, 15, 9

Ssa-mir: 199a-1, 214-2

2 contigs

Dre-mir: 199–1, 214

1

20

Ssa-mir: 29a, 29b-2

2 contigs

Dre-mir: 29b-2, 29a

1

4

Ssa-mir: 200b-1, 429

2 contigs

Dre-mir: 200b, 200a, 429a

1

23

Ssa-mir: 1–2, 133-4

2 contigs

Dre-mir: 1–2, 133a-1

1

Zv9_scaffold_3540

Ssa-mir: 143, 145-2

1 contig

Dre-mir: 143–1, 145

1

14

Ssa-mir: 181b, 181a-5

1 contig

Dre-mir: 181a-2, 181b-2

1

8

Ssa-mir: 193, 365-2

2 contigs

Dre-mir: 193a-1, 365-2

2

3, 6

  1. 1Number of different contigs in S. salar with similar precursors clustered in same transcriptional direction.
  2. 2Number of clusters in D. rerio with similar precursors in same transcriptional direction.
  3. 3Chromosomal location of miRNA gene clusters in D. rerio.
  4. 4Multiple 430 family genes in one large cluster.
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BMC Genomics

ISSN: 1471-2164

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