De novo RNA-Seq | # Reads | De novo assembled transcripts | Transcripts aligning to Anocar2.0 assembly | PASA assembled transcripts |
---|---|---|---|---|
Embryo-28 somite stage | 52,548,024 | 83,627 | 81,032 | 22,670 |
Embryo-38 somite stage | 55,048,179 | 99,578 | 95,753 | 24,595 |
Regenerating tail tip | 122,099,352 | 92,275 | 88,150 | 22,278 |
Regenerating tail base | 31,721,054 | 78,005 | 73,516 | 24,897 |
Original tail | 109,404,060 | 96,450 | 91,601 | 20,240 |
Adrenal | 55,858,836 | 110,349 | 101,449 | 20,482 |
Brain | 32,518,977 | 203,519 | 192,407 | 33,912 |
Dewlap skin | 31,785,178 | 81,598 | 76,866 | 25,853 |
Embryos (pooled) | 59,681,427 | 118,949 | 110,124 | 19,969 |
Heart | 34,068,834 | 154,255 | 144,617 | 26,582 |
Liver | 50,782,350 | 89,010 | 81,441 | 21,549 |
Lung | 48,723,049 | 272,071 | 255,035 | 37,985 |
Ovary | 35,139,647 | 80,306 | 75,807 | 26,827 |
Skeletal Muscle | 42,707,477 | 75,006 | 69,250 | 18,857 |
Total | 762,086,444 | 1,634,998 | 1,537,048 | 346,696 |
EST Library (NCBI) | # Sequences | NCBI defined UniGene groups | Transcripts aligning to Anocar2.0 assembly | PASA assembled transcripts |
Brain | 19,139 | 5,631 | 9,991 | 1,715 |
Dewlap skin | 19,809 | 5,453 | 10,180 | 2,216 |
Embryo | 38,923 | 8,714 | 9,991 | 4,158 |
Mixed Organ | 19,863 | 5,657 | 9,327 | 2,053 |
Ovary | 19,410 | 5,467 | 7,394 | 3,737 |
Regenerating Tail | 19,851 | 6,751 | 11,064 | 6,757 |
Testis | 19,807 | 4,261 | 8,677 | 2,594 |
Total | 156,802 | 41,934 | 66,624 | 23,230 |