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Figure 2 | BMC Genomics

Figure 2

From: Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species

Figure 2

Relative copy-number of transposable elements using reference based mapping. Relative copy-numbers of the TE super-families in the three species represented with bar plots. Relative copy-number was calculated by dividing the total coverage of each super-family, within a sample, by the sample’s mean UCOS coverage. The much lower recovery of transposable elements in the other species is apparently due to mapping failure as the graph based clustering indicates that TE copy numbers are comparable in all species. Error bars represent standard deviation and correspond to intraspecific variation.

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BMC Genomics

ISSN: 1471-2164

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