Table 1 Sequence summary statistics
Name | Chloroplast haplotype1 | Read length (bp) | No. reads | No. reads after trimming | UCOS coverage |
|---|---|---|---|---|---|
EET-64 (T. cacao) | Criollo | 60 | 6.6E + 07 | 6.5E + 07 | 5.4 |
Criollo-22 (T. cacao) | Criollo | 60 | 4.6E + 07 | 4.2E + 07 | 4.4 |
Stahel (T. cacao) | Criollo | 60 | 6.0E + 07 | 5.7e + 07 | 5.3 |
Pentagonum (T. cacao) | Criollo | 80 | 5.8E + 07 | 5.5E + 07 | 5.2 |
ICS39 (T. cacao) | Criollo | 80 | 6.4E + 07 | 6.0E + 07 | 5.9 |
Amelonado (T. cacao) | Forastero | 60 | 7.0E + 07 | 6.8E + 07 | 5.9 |
ICS06 (T. cacao) | Forastero | 80 | 6.4E + 07 | 6.1E + 07 | 6.3 |
ICS01 (T. cacao) | Forastero | 60 | 5.0E + 07 | 4.9E + 07 | 4.4 |
Scavina-6 (T. cacao) | Forastero | 60 | 3.8E + 07 | 2.9E + 07 | 1.8 |
T. grandiflorum (Cupuaçu) | na | 60 | 7.2E + 07 | 6.8E + 07 | 5.8 |
H. balaensis | na | 80 | 7.7E + 07 | 7.4E + 07 | 9.4 |