Figure 4

Data supporting identification of E2F-like motifs. A. E2F-like motifs. Motif name and total number of genes possessing each motif per total genes in all clusters where the motif is overrepresented are indicated. B. Expression data for 2, 6, 12, 24, 36, 48 and 72 hours post-infection for all genes from each cluster where the motif is overrepresented. Each row indicates a gene; rows are sorted first by cluster, then by peak expression at each time point. Gene IDs for genes associated with each cluster can be found in Additional file 1: Table S2. Expression is indicated on a scale of 0-100% of max for each gene. C. Six representative cluster profiles selected from the 161 clusters containing overrepresented E2F-like motifs. Line colors for individual gene profiles indicate the membership values of that gene profile to the cluster ranging from 0.5 to 1. Each cluster profile is located next to the corresponding rows in the gene expression heatmap. D. Cluster number and total number of genes in each displayed representative cluster.