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Table 3 Intraspecies phylogenetic markers of the three Nannochloropsis oceanica strains of CCMP531, CCMP1779 and IMET1

From: Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae

Region

Location

CCMP531

IMET1

CCMP1779

Synonymous/nonsynonymous

rps11_mt-nad4

8512

G

A

A

-

 

8513

C

T

T

-

 

8555

-

G

G

-

 

8577

C

A

A

-

nad4

8710

T

C

C

synonymous

 

8720

G

A

A

synonymous

 

8941

C

A

A

synonymous

 

8956

C

T

T

synonymous

rps3_mt

21403

G

C

C

synonymous

 

21488

T

C

C

synonymous

 

21583

A

T

T

synonymous

 

21637

A

G

G

synonymous

 

21682

A

G

G

synonymous

 

21940

G

A

A

synonymous

cox2-rrn16_mt

34621

G

T

T

-

 

34727

A

G

G

-

 

34756

C

T

T

-

 

34801

A

G

G

-

 

34866

-

T

T

-

 

34867

-

T

T

-

 

34870

-

A

A

-

 

34871

-

A

A

-

 

34880

A

-

-

-

 

34885

A

-

-

-

 

34898

T

C

C

-

 

34927

-

A

A

-

 

34934

C

T

T

-

 

34971

G

A

A

-

 

34995

A

A

T

-

  1. Note: “-” indicated that the mutation was located at a non-protein-coding region.