Skip to main content

Table 3 Intraspecies phylogenetic markers of the three Nannochloropsis oceanica strains of CCMP531, CCMP1779 and IMET1

From: Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae

Region Location CCMP531 IMET1 CCMP1779 Synonymous/nonsynonymous
rps11_mt-nad4 8512 G A A -
  8513 C T T -
  8555 - G G -
  8577 C A A -
nad4 8710 T C C synonymous
  8720 G A A synonymous
  8941 C A A synonymous
  8956 C T T synonymous
rps3_mt 21403 G C C synonymous
  21488 T C C synonymous
  21583 A T T synonymous
  21637 A G G synonymous
  21682 A G G synonymous
  21940 G A A synonymous
cox2-rrn16_mt 34621 G T T -
  34727 A G G -
  34756 C T T -
  34801 A G G -
  34866 - T T -
  34867 - T T -
  34870 - A A -
  34871 - A A -
  34880 A - - -
  34885 A - - -
  34898 T C C -
  34927 - A A -
  34934 C T T -
  34971 G A A -
  34995 A A T -
  1. Note: “-” indicated that the mutation was located at a non-protein-coding region.