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Table 2 Straw-induced non-CAZy genes

From: Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Transcript ID

Annotation

48 h Glucose RPKM

24 h Straw RPKM

5 h Glucose RPKM

Lipases

64397

Ceramidase family protein, associated to cellulase signal transduction

2.40

95.94

1.08

Surface interacting proteins

119989

HFB2, class II hydrophobin

0.79

503.22

262.84

74282

QI74 orthologue, cell wall protein

0.30

272.50

12.53

123967

HFB3, class II hydrophobin

0.54

182.32

33.50

104277

Cell wall protein, contains HsbA conserved domain

0.15

87.68

0.29

124295

Cell wall protein with a CFEM domain

0.17

58.28

9.80

Enzymes of carbon and nitrogen metabolism

107776

Xylose reductase XYL1

2.79

294.24

4.42

123009

Glutamine synthetase

7.90

214.02

176.34

80340

Alpha1,6-mannosyltransferase

0.18

117.78

3.34

120784

Aldose-1-epimerase

1.43

106.24

1.96

81271

Xylitol dehydrogenase XDH1

3.58

74.44

4.64

49753

L-arabinitol 4-dehydrogenase LAD1

0.07

55.57

0.32

Transporters

3405

MFS (major facilitator superfamily) permease

1.14

1658.36

2.94

50894

MFS permease

0.37

466.75

0.60

104072

Xylose transporter

0.27

324.06

0.30

69957

MFS permease

0.24

314.19

0.48

82309

Predicted MFS transporter

0.47

152.99

0.17

120017

Oligopeptide transporter

1.84

141.28

8.13

106330

MFS transporter

0.52

92.17

0.65

50618

MFS transporter

0.14

88.17

0.58

38812

Iron transporter

0.66

68.02

5.06

80863

MFS transporter

1.80

67.87

9.25

46794

Oligopeptide transporter

0.17

56.32

3.48

Gene regulation

44747

SNF2 family helicase

6.21

228.14

23.38

80980

Peptidyl arginine deiminase

0.09

118.95

10.07

108357

C2H2 transcriptional regulator

0.62

108.73

0.65

Oxidation-related

80659

Alcohol oxidase AOX1

0.95

1618.88

1.03

56840

GFO_IDH_MocA dehydrogenase

1.93

407.87

1.56

76696

Flavin-containing monooxygenase

0.67

111.38

0.49

123827

Bifunctional catalase/peroxidase

4.13

105.08

6.58

22771

Dehydrogenase

2.01

79.27

1.02

123978

Methanol oxidase

0.21

61.55

0.24

  1. Highly expressed non-CAZy-encoding genes with an RPKM value greater than 50 at 24 h straw and an over 20-fold expression between 48 h glucose and 24 h straw.