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Table 2 Straw-induced non-CAZy genes

From: Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Transcript ID Annotation 48 h Glucose RPKM 24 h Straw RPKM 5 h Glucose RPKM
Lipases
64397 Ceramidase family protein, associated to cellulase signal transduction 2.40 95.94 1.08
Surface interacting proteins
119989 HFB2, class II hydrophobin 0.79 503.22 262.84
74282 QI74 orthologue, cell wall protein 0.30 272.50 12.53
123967 HFB3, class II hydrophobin 0.54 182.32 33.50
104277 Cell wall protein, contains HsbA conserved domain 0.15 87.68 0.29
124295 Cell wall protein with a CFEM domain 0.17 58.28 9.80
Enzymes of carbon and nitrogen metabolism
107776 Xylose reductase XYL1 2.79 294.24 4.42
123009 Glutamine synthetase 7.90 214.02 176.34
80340 Alpha1,6-mannosyltransferase 0.18 117.78 3.34
120784 Aldose-1-epimerase 1.43 106.24 1.96
81271 Xylitol dehydrogenase XDH1 3.58 74.44 4.64
49753 L-arabinitol 4-dehydrogenase LAD1 0.07 55.57 0.32
Transporters
3405 MFS (major facilitator superfamily) permease 1.14 1658.36 2.94
50894 MFS permease 0.37 466.75 0.60
104072 Xylose transporter 0.27 324.06 0.30
69957 MFS permease 0.24 314.19 0.48
82309 Predicted MFS transporter 0.47 152.99 0.17
120017 Oligopeptide transporter 1.84 141.28 8.13
106330 MFS transporter 0.52 92.17 0.65
50618 MFS transporter 0.14 88.17 0.58
38812 Iron transporter 0.66 68.02 5.06
80863 MFS transporter 1.80 67.87 9.25
46794 Oligopeptide transporter 0.17 56.32 3.48
Gene regulation
44747 SNF2 family helicase 6.21 228.14 23.38
80980 Peptidyl arginine deiminase 0.09 118.95 10.07
108357 C2H2 transcriptional regulator 0.62 108.73 0.65
Oxidation-related
80659 Alcohol oxidase AOX1 0.95 1618.88 1.03
56840 GFO_IDH_MocA dehydrogenase 1.93 407.87 1.56
76696 Flavin-containing monooxygenase 0.67 111.38 0.49
123827 Bifunctional catalase/peroxidase 4.13 105.08 6.58
22771 Dehydrogenase 2.01 79.27 1.02
123978 Methanol oxidase 0.21 61.55 0.24
  1. Highly expressed non-CAZy-encoding genes with an RPKM value greater than 50 at 24 h straw and an over 20-fold expression between 48 h glucose and 24 h straw.