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Table 1 Association results for phase I

From: A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12

LOCUS

SNP

BP

Allele

MAF cases

MAF controls

OR (95% CI)

P value

1p33

rs12080929

48.208.735

C

0.249

0.312

0.731 (0.621-0.860)

9.447E-05

2p25.2

rs4669394

5.541.078

C

0.049

0.087

0.731 (0.622-0.860)

3.113E-05

2p24.1

rs1554267

22.284.451

A

0.457

0.371

1.429 (1.231-1.658)

3.139E-06

3p21.31

rs8180040

47.363.951

A

0.366

0.454

0.695 (0.599-0.806)

1.595E-06

3q12-q13

rs6438550

121.019.507

G

0.038

0.072

0.511 (0.369-0.709)

6.789E-05

5q35.1

rs11740081

172.707.280

A

0.123

0.188

0.604 (0.494-0.741)

6.789E-05

6q16.1

rs12213685

99.288.865

G

0.163

0.106

1.643 (1.313-2.042)

1.136E-05

6q23.1

rs12199765

131.192.418

A

0.268

0.202

1.434 (1.217-1.726)

5.428E-05

8p12

rs11996339

29.386.099

C

0.351

0.448

0.667 (0.574-0.774)

9.697E-08

8p12

rs11987193

29.391.927

A

0.237

0.309

0.691 (0.589-0.818)

9.752E-06

8p12

rs12548021

29.400.381

G

0.378

0.289

1.478 (1.279-1.749)

1.073E-06

8q13.3

rs17788534

72.697.475

C

0.198

0.141

1.509 (1.237-1.841)

7.903E-05

8q22.1

rs3104964

96.664.912

C

0.452

0.367

1.422 (1.225-1.652)

5.201E-06

10p15.1

rs7074607

5.623.371

A

0.151

0.1025

1.556 (1.242-1.949)

8.901E-05

10q23.31

rs7087402

92.760.125

A

0.527

0.4436

1.398 (1.208-1.619)

5.202E-06

12q24.31

rs568489

119.578.624

G

0.478

0.397

1.391 (1.200-1.612)

1.650E-05

13q32.3

rs17196583

99.624.356

A

0.201

0.145

1.488 (1.222-1.812)

7.307E-05

14q31.3

rs7148493

85.094.169

G

0.431

0.362

1.332 (1.147-1.548)

9.823E-05

14q32.12

rs8177528

92.247.404

A

0.407

0.335

1.367 (1.174-1.591)

5.471E-05

15q21.3

rs4644804

52.164.106

A

0.387

0.316

1.368 (1.173-1.596)

5.403E-05

15q25.3

rs16941001

86.249.170

A

0.101

0.059

1.806 (1.361-2.396)

3.704E-05

17p13.2

rs16954697

5.297.637

A

0.150

0.098

1.625 (1.293-2.044)

2.522E-05

17p12

rs9898623

13.255.126

A

0.045

0.085

0.512 (0.378-0.692)

1.625E-05

18p11.22

rs10502376

8.579.765

A

0.426

0.496

0.753 (0.651-0.872)

9.819E-05

18q21.2

rs2958182

51.300.019

A

0.330

0.261

1.392 (1.184-1.636)

9.792E-05

22q12.3

rs956119

34.582.213

G

0.064

0.104

0.591 (0.453-0.770)

9.193E-05

  1. Main features of the SNPs associated in Phase I. Only the top associated SNPs at each of the 24 independent loci is shown. All genomic positions correspond to NCBI36/hg18.
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