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Table 2 Selected unigenes (1000 bp) related to reproductive and vegetative growth from longan EC transcriptome annotated by Nr

From: Analysis of the global transcriptome of longan (Dimocarpus longan Lour.) embryogenic callus using Illumina paired-end sequencing

Related plant organ, tissue or bioprocess (total No. of unigenes) Related genes No. of unigenes (1000 bp )
Embryo (328 unigenes) PPR; Pentatricopeptide repeat-containing protein, related to embryo development 253
EMB (EMBRYO DEFECTIVE) 30, 976, 1011, 1030, 1135, 1270, 1273, 1374, 1417, 1674, 1691, 1703, 1789, 2016, 2247, 2261, 2410, 2411, 2421, 2453, 2454, 2458, 2730, 2733, 2745, 2746, 2750, 2754, 2756, 2761, 2765, 2766, 2771, 2773, 2776 42
MEE; Maternal effect embryo arrest 47, 55, 12, 62, 40, 22 7
ISE ( Increased size exclusion limit)1a, 2; 3
ISE 2(EMB 25), related to lethal embryo, Essential protein required during embryogenesis.
EYE; Embryo yellow, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana. an embryo yellow (eye) mutation in Arabidopsis that leads to the abnormal coloration and morphology of embryos 1
EDD 1; Embryo defective development 1 1
LEA related proteins 4
Embryogenesis transmembrane protein-like 1
SERK; somatic embryogenesis receptor kinase 4
DIE2/ALG10 family, related to embryonic 1
AHG 2 (ABA-HYPERSENSITIVE GERMINATION 2) 1
seed imbibition protein 1 1
DNA binding / protein dimerization, controls expression of genes during embryonic morphogenesis. 1
lectin-like receptor kinase 7, regulates ABA response during seed germination 1
NIMA-related protein kinase, suppresses ectopic outgrowth of epidermal cells through its kinase activity and the association with microtubules (epidermal cells of the hypocotyls and petioles) 1
BIO 1 (biotin auxotroph 1), related to embryo development 1
RST 1 (Resurrection 1), related to wax metabolism and embryo development 1
similar to wax synthas e/wax synthase-like protein, related to wax metabolism and embryo development 2
3-ketoacyl-CoA synthase, related to wax metabolism and embryo development. 1
CER 1 (ECERIFERUM 1), related to wax metabolism and embryo development 1
Embryo sac (7 unigenes) Unfertilized embryo sac 1, 2 3
EDA; embryo sac development arrest 7, 16, 39, 30 4
Ovule (1 unigenes) BEL1-like homeodomain transcription factor, involved in regulation of ovule development in Arabidopsis 1
Endosperm (2 unigenes) ACR4 CRINKLY 4 (Cr 4), belongs to cell fate-specifying genes and is required to specify aleurone cell. 1
VQ-motif containing protein, regulates endosperm growth and seed size 1
Female gametophyte (2 unigenes) SLOW WALKER 1,2, related to female gametophyte , and essential for female gametogenesis 2
Pollen and male gameto- phyte (25 unigenes) Less adherent pollen 1 (callose synthase 5; CALS 5) 1
NPG 1 (no pollen germination 1) 1
NPGR (no pollen germination related )1, 2 2
AtPSKR 2; Phytosulfokine receptor 2, regulates pollen germination 1
DUO pollen 3-like protein, is a key regulator of male germline development and embryogenesis 1
Villin headpiece, is necessary for normal pollen tube growth. 2
VLN 1, 2 (Vilin-like 1, 2), related to pollen tube growth. 2
THE 1 (THESEUS 1), inhibiting cell elongation during pollen tube/synergid cell recognition and in sensing cell wall integrity after damage. 1
extra sporogenous cells (EXS), related to tapetum development 1
EMS 1,EXCESS MICROSPOROCYTES 1 1
callose synthase 1, 5, 7, 9, 10, 11, 12, putative 11
PAB 6;POLY(A) BINDING PROTEIN 6, related to male gametophyte 1
HUA enhancer 2, related to the development of stamens and petals 1
Fertility and compatibility (3 unigenes) Male sterility MS5 1
fringe-related protein, related to fertility 1
arm repeat-containing protein, related to incompatibility 1
Flower and flowering (16 unigenes) flowering locus C Variant 5, D 2
Early flowering 3, 6 3
Similar to PIE 1; photoperiod -independent early flowering 1 2
REF 6;relative of early flowering 6 2
Embryonic flowe r 1, involved in the control of shoot architecture and flowering 1
CDPK-related protein kinase, related to flowering time 1
FPA; Flowering time control protein 1
PTL; petal loss 1
PAN (PERIANTHIA), controlling the number of floral organs such as calyx and petals 1
tesmin/TSO1-like CXC domain-containing protein, required for organ formation in floral tissues. 2
Sexuality (1 unigenes) GHMP kinase-related, primary determinant of sexual fate in C. elegans 1
Meiosis (7 unigenes) MLH 3 (MUTL PROTEIN HOMOLOG 3), related to meiosis. 2
similar to MRE 11 (Meiotic recombination 11) 1
Meiotic recombination protein DMC1 homolog 1
MEI 1 (meiosis defective 1) 1
PMS 1 (POSTMEIOTIC SEGREGATION 1) 1
ZYP 1a, Synaptonemal complex protein 1, related to meiosis. 1
Root (15 unigenes) Root cap protein 2-like 1
IRE (INCOMPLETE ROOT HAIR ELONGATION) 3
Morphogenesis of root hair 2 2
TRH 1 (TINY ROOT HAIR 1) 2
Root hair defective 3 1
Skewed roots; SKU5 1
ALF 4 (ABERRANT LATERAL ROOT FORMATION 4) 1
Roothairless 1, 3 2
Similar to Scarecrow, essential for ground tissue organization in both root and shoot 1
ATIREG 2 (IRON-REGULATED PROTEIN 2), involved in iron-dependent nickel detoxification in roots 1
Nitrogen fixation (2 unigenes) vapyrin-like protein, related to arbuscular mycorrhiza. 1
allantoate amidohydrolase, related to nitrogen fixation. 1
Stem or meristem (11 unigenes) IMK 2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) 1
REPRODUCTIVE MERISTEM 16 1
BAM 1 (BARELY ANY MERISTEM 1) 1
SPK 1 (SPIKE 1), required for epidermal morphogenesis and the normal shape of cells and tissues. 1
Phytocalpain, controls the proliferation and differentiation fates of cells in plant organ development 1
similar to SAB, suppressors of ABC, related to epidermal hair and branch. 1
SGR 2 (SHOOT GRAVITROPISM 2) 1
Phototropic-responsive NPH3 family protein, related to phototropic hypocotyl 3
NPH 3 (NON-PHOTOTROPIC HYPOCOTYL 3) 1
Leaf (5 unigenes) LNG 1 (LONGIFOLIA 1) 1
SWP (STRUWWELPETER), related to Cell numbers and leaf development. The levels of SWP, besides their role in pattern formation at the meristem, play an important role in defining the duration of cell proliferation. 2
EDR 1 (enhanced disease resistance 1) a negative regulator of disease resistance and ethylene-induced senescence of leaves. 1
  YLS 7, leaf-senescence-related protein 1