Table 4 List of candidate genes in rice collinear regions with a 4-fold change in transcript levels in response to powdery mildew
Chr | Marker interval wheat | Locus interval rice | Rice locus | BLASTX best hit | Putative function | E value |
|---|---|---|---|---|---|---|
3A | Xbcd22-Xbcd372 | Os01g47540 (Os01g0665300)-Os01g67800 | Os01g48610 (Os01g0677900) | NP_001043854 | unknown | 0.00E + 00 |
Os01g50100 (Os01g0695800) | CAD59587 | MDR-like ABC transporter | 0.00E + 00 | |||
Os01g50420 (Os01g0699600) | ACH99698 | NPKL4 | 0.00E + 00 | |||
Os01g51670 (Os01g0714600) | NP_001044058 | unknown | 1.00E-98 | |||
Os01g53920 (Os01g0742400) | BAD87898 | putative LRK1 protein | 0.00E + 00 | |||
Os01g55560 (Os01g0760900) | Q5JMF2 | Abl interactor-like protein 5 | 0.00E + 00 | |||
Os01g55974 (Os01g0765000) | BAD87146 | deoxycytidylate deaminase-like | 7.00E-164 | |||
Os01g56560 (Os01g0772400) | EAY75988 | putative coenzyme Q binding site | 2.00E-133 | |||
Os01g57730 (Os01g0787000) | BAB90103 | putative peroxidase | 0.00E + 00 | |||
Os01g58170 | BAD53004 | S-adenosylmethionine-dependent methyltransferase | 7.00E-35 | |||
Os01g60730 (Os01g0822800) | BAB86495 | putative RING-H2 zinc finger protein | 2.00E-60 | |||
Os01g62430 (Os01g0841700) | Q0JHU5 | Elicitor-responsive protein 1 | 5.00E-105 | |||
Os01g63380 (Os01g0852650) | EAZ14299 | MULE transposase domain | 0.00E + 00 | |||
Os01g63920 | BAD82052 | unknown | 9.00E-74 | |||
2B | wPt-2120-Xcdo244 | Os04g22100-Os04g59494 (Os04g0691500) | Os04g30670 | ADB85432 | putative retrotransposon protein | 1.00E-05 |
Os04g34540 (Os04g0422700) | EAY94121 | hypothetical protein | 5.00E-30 | |||
Os04g27020 | NP_001052496 | Cytochrome P450 family protein | 0.00E + 00 | |||
Os04g28140 | CAE02105 | unknown | 4.00E-93 | |||
Os04g47400 (Os04g0561900) | NP_001053555 | unknown | 0.00E + 00 | |||
Os04g47650 (Os04g0564100) | EAZ41424 | Peptidase S9A | 3.00E-05 | |||
Os04g38930 (Os04g0463300) | CAE76009 | PPR repeat family | 0.00E + 00 | |||
Os04g39350 (Os04g0469000) | NP_001053041 | unknown | 5.00E-46 | |||
Os04g53998 (Os04g0632100) | NP_001053986 | S-locus receptor-like kinase RLK13 | 0.00E + 00 | |||
Os04g57570 | AAO37957 | putative gag-pol polyprotein | 0.00E + 00 | |||
4B | Xbcd110-wPt-9223 | Os03g04410 (Os03g0136900)- Os03g16310 | Os03g01740 (Os03g0107700) | Q10SY2 | Cyclin-dependent protein kinase inhibitor EL2 | 3.00E-54 |
Os03g03034 (Os03g0122300) | ABF93706 | 2OG-Fe oxygenase family protein | 0.00E + 00 | |||
Os03g07880 (Os03g0174900) | ABF94255 | CCAAT-Binding transcription Factor | 7.00E-161 | |||
Os03g10100 (Os03g0197200) | EEE58504 | Sugar transporter family protein | 0.00E + 00 | |||
Os03g11690 (Os03g0216300) | EEC74765 | PPR repeat family | 0.00E + 00 | |||
Os03g10600 (Os03g0203100) | EEE58531 | Urb2/Npa2 pre-60S ribosomal particles family | 0.00E + 00 | |||
Os03g15320 (Os03g0258900) | ABF95066 | glyoxal oxidase | 0.00E + 00 | |||
5B | - | Os09g01690 (Os09g0104300)-Os09g38790 (Os09g0560900) | Os09g10550 | NP_001175748 | Ulp1 protease family | 4.00E-143 |
Os09g11480 (Os09g0287000) | BAD29670 | ethylene responsive AP2/ERF domain protein | 1.00E-73 | |||
Os09g21620 (Os09g0384300) | BAD25962 | F-box-like protein | 0.00E + 00 | |||
Os09g23610 (Os09g0400900) | BAD28514 | unknown | 3.00E-30 | |||
Os09g25520 | BAD33414 | unknown | 0.00E + 00 | |||
Os09g29710 (Os09g0472900) | NP_001063448 | Blight-associated protein p12 precursor | 1.00E-70 | |||
Os09g31019 (Os09g0483200) | NP_001063507 | Ribosomal L40e family | 3.00E-82 | |||
Os09g32360 (Os09g0499400) | BAF25485 | unknown | 0.00E + 00 | |||
Os09g39080 (Os09g0564200) | EAZ45686 | unknown | 3.00E-39 |