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Table 4 Classification and comparison of the C2H2 ZNF genes hosting highly-expressed TE exons

From: Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data

TE

N1

N2

N3

N4

p

Alu

850

51

143

17

7.65E-04

CR1

11

0

4

0

NA

ERV1

29

0

13

0

NA

ERVL

19

1

6

1

0.00E + 00

L1

148

12

24

5

4.71E-03

L2

79

7

34

5

2.27E-02

MaLR

57

1

18

1

0.00E + 00

MER1

40

2

13

1

1.00E-01

MER2

37

2

15

2

0.00E + 00

MIR

132

4

56

3

3.04E-02

Other_DNA

4

0

1

0

NA

  1. TE: the categories of exonized TEs. N1: the number of the genes hosting TE exons. N2: the number of C2H2 ZNF genes hosting TE exons. N3: the number of genes hosting the highly-expressed TE exons. N4: the number of C2H2 ZNF genes hosting the highly-expressed TE exons. Among the 327 highly-expressed TE exons, 115 are included in the UCSC RefGene table.