Table 3 Non-synonymous SNPs across C. concisus strains displaying categorisation based on known phenotypes
Gene ID | aa position | bp position | UNSW2 | UNSW3 | UNSW1 | UNSWCD | UNSWCS | ATCC51562 | ATCC51561 | BAA1457 | Phenotype | Domains | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Name | Type | start | end | |||||||||||
Bile efflux (Cme) pathway | |||||||||||||||
CmeB | 848 | 2544 | GAC:D | GAC:D | GAT:D | GAT:D | GAC:D | GAG:E | GAG:E | GAT:D | Adherence | ACR_tran | PFAM | 2 | 1024 |
CmeB | 519 | 1557 | AGG:R | AGG:R | AGG:R | AGG:R | AGG:R | AAG:K | AAG:K | AAG:K | Motility | ACR_tran | PFAM | 2 | 1024 |
CmeD | 227 | 681 | AAG:K | AAG:K | AAG:K | AAG:K | AGG:R | AGA:R | AGG:R | AGG:R | Invasive | NA | |||
CmeD | 229 | 687 | AGT:S | AGT:S | AGT:S | AGT:S | AAT:N | AAT:N | AAT:N | AAT:N | Invasive | NA | |||
CmeD | 233 | 699 | TCT:S | TCT:S | TCT:S | TCT:S | TCT:S | TTT:F | TTT:F | TTT:F | Motility | NA | |||
CmeD | 234 | 702 | TTA:L | TTA:L | TTA:L | TTA:L | TTA:L | ATA:I | ATA:I | ATA:I | Motility | NA | |||
CmeD | 163 | 489 | CCA:P | CCA:P | CCA:P | CCA:P | CCA:P | GCG:A | GCA:A | CCA:P | Adherence | OEP | PFAM | 32 | 201 |
CmeD | 362 | 1086 | AGA:R | AGA:R | AGA:R | AGA:R | AGA:R | AAA:K | AAA:K | AGA:R | Adherence | NA | |||
00540|Lipopolysaccharide biosynthesis | |||||||||||||||
CCC13826_0577 | 161 | 483 | AAC:N | AAC:N | AAC:N | AAC:N | AAC:N | AGC:S | AGC:S | AAC:N | Adherence | NA | |||
CCC13826_0577 | 161 | 483 | AAC:N | AAC:N | AAC:N | AAC:N | AAC:N | AGC:S | AGC:S | AAC:N | Adherence | PfkB | PFAM | 6 | 298 |
CCC13826_0470 | 104 | 312 | ATT:I | ATT:I | ATT:I | ATT:I | ATT:I | ACT:T | ACT:T | ATT:I | Adherence | Glyco_transf_9 | PFAM | 75 | 290 |
00550|Peptidoglycan biosynthesis | |||||||||||||||
CCC13826_1265 | 202 | 606 | AGA:R | AGA:R | AGA:R | AGA:R | AGA:R | AAG:K | AAA:K | AAA:K | Motility | EPSP_synthase | PFAM | 8 | 409 |
CCC13826_1740 | 184 | 552 | GTA:V | GTA:V | GTA:V | GTA:V | GTA:V | ATG:M | ATG:M | GTA:V | Adherence | NA | |||
CCC13826_1740 | 184 | 552 | GTA:V | GTA:V | GTA:V | GTA:V | GTA:V | ATG:M | ATG:M | GTA:V | Adherence | Mur_ligase_M | PFAM | 64 | 257 |
CCC13826_1242 | 26 | 78 | GGC:G | GGC:G | GGC:G | GGC:G | GGC:G | GAT:D | GAC:D | GGT:G | Adherence | Glyco_transf_28 | PFAM | 2 | 139 |
CCC13826_1242 | 26 | 78 | GGC:G | GGC:G | GGC:G | GGC:G | GGC:G | GAT:D | GAC:D | GGT:G | Adherence | NA | |||
CCC13826_1254 | 361 | 1083 | CTG:L | CTA:L | CTA:L | CTA:L | CTG:L | ATA:I | ATA:I | ATA:I | Motility | NA | |||
CCC13826_1254 | 361 | 1083 | CTG:L | CTA:L | CTA:L | CTA:L | CTG:L | ATA:I | ATA:I | ATA:I | Motility | Transpeptidase | PFAM | 295 | 532 |
CCC13826_1254 | 636 | 1908 | GTC:V | GTT:V | GTT:V | GTC:V | GTT:V | ATT:I | ATT:I | GTT:V | Adherence | NA | |||
CCC13826_1254 | 636 | 1908 | GTC:V | GTT:V | GTT:V | GTC:V | GTT:V | ATT:I | ATT:I | GTT:V | Adherence | NA | |||
Sulfur relay system | |||||||||||||||
CCC13826_1163 | 132 | 396 | GAT:D | GAT:D | GAT:D | GAT:D | GAC:D | GAA:E | GAG:E | GAC:D | Adherence | Aminotran_5 | PFAM | 3 | 366 |
N-glycosylation pathway | |||||||||||||||
PglB_699 | 20 | 60 | ATC:I | ATC:I | ATC:I | ATC:I | ATC:I | CTT:L | CTT:L | CTT:L | Motility | STT3 | PFAM | 10 | 503 |
PglI | 19 | 57 | AAA:K | AAA:K | AAA:K | AAA:K | AAA:K | CAA:Q | CAA:Q | AAA:K | Adherence | Glycos_transf_2 | PFAM | 7 | 123 |
PglI | 36 | 108 | GTT:V | GTT:V | GTT:V | GTT:V | GTT:V | ATA:I | ATA:I | ATA:I | Motility | Glycos_transf_2 | PFAM | 7 | 123 |
PglJ | 312 | 936 | GAT:D | GAT:D | GAT:D | GAT:D | GAG:E | GAG:E | GAG:E | GAG:E | Invasive | Glycos_transf_1 | PFAM | 195 | 351 |