Table 2 Summary of SNP validation result
From: Development of a high density 600K SNP genotyping array for chicken
| Â | Number | Percent |
|---|---|---|
Number of SNPs selected for validation | 1,829,290 | Â |
Marker conversion success | Â | Â |
SNPs found polymorphic (in one or more lines) | 1,187,482 | 64.91 |
SNPs declared monomorphic due to low allele count | 313,000 | 17.11 |
SNPs failed to convert | 328,808 | 17.97 |
Mendelian inheritance check | Â | Â |
Number of trios checked | 32 | Â |
Number of polymorphic SNPs failed to show stable Mendelian inheritance in one or more trios | 10,674 | 0.58 |